JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP8_chr15_50419405_50519421	0/0	t0018	15499	3	3	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0019	15506	3	3	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0020	15508	3	0	3	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0021	15506	3	0	0	3	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0022	15508	3	0	0	2	0	1	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0023	15496	2	0	1	0	0	1	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0024	15497	2	0	2	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0025	15497	2	0	2	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0026	15497	2	0	1	0	0	1	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0027	15498	2	0	0	2	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0028	15497	2	0	0	1	0	1	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0029	15497	2	0	0	2	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0030	15505	2	0	2	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0031	15504	2	0	2	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0032	15509	2	0	0	2	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0033	15500	2	0	0	2	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0034	15498	2	0	0	1	0	1	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0035	15496	2	0	0	2	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0036	15501	2	0	0	1	0	1	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0037	15500	2	0	2	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0038	15504	2	2	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0039	15507	2	2	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0040	15501	2	0	0	2	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0041	15507	2	0	0	2	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0042	15506	2	0	0	2	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0043	15506	2	0	0	2	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0044	15499	2	0	0	2	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0045	15504	2	0	2	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0046	15509	2	2	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0047	15506	2	2	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0048	15507	2	0	0	2	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0049	15506	2	0	0	2	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0050	15508	2	0	2	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0051	15507	2	0	0	2	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0052	15495	2	0	2	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0053	15496	1	0	0	0	1	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0054	15495	1	0	0	0	1	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0055	15497	1	0	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0056	15497	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0057	15496	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0058	15505	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0059	15499	1	0	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0060	15497	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0061	15495	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0062	15499	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0063	15499	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0064	15496	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0065	15499	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0066	15495	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0067	15496	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421