JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP8_chr15_50419405_50519421	0/0	t0068	15497	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0069	15496	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0070	15495	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0071	15505	1	0	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0072	15500	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0073	15498	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0074	15499	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0075	15496	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0076	15501	1	0	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0077	15508	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0078	15503	1	0	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0079	15498	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0080	15504	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0081	15497	1	0	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0082	15504	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0083	15508	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0084	15508	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0085	15506	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0086	15500	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0087	15500	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0088	15499	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0089	15498	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0090	15498	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0091	15499	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0092	15499	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0093	15497	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0094	15496	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0095	15498	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0096	15496	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0097	15497	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0098	15483	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0099	15495	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0100	15495	1	0	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0101	15501	1	0	0	0	0	1	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0102	15499	1	0	0	0	0	1	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0103	15505	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0104	15499	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0105	15495	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0106	15503	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0107	15497	1	0	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0108	15498	1	0	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0109	15498	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0110	15496	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0111	15506	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0112	15497	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0113	15495	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0114	15499	1	0	0	0	1	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0115	15501	1	0	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0116	15508	1	0	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0117	15499	1	0	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421