JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP8_chr15_50419405_50519421	0/0	t0268	15508	1	0	0	0	0	1	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0269	15509	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0270	15509	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0271	15505	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0272	15505	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0273	15505	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0274	15496	1	0	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0275	15506	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0276	15509	1	0	0	0	0	1	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0277	15507	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0278	15506	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0279	15504	1	0	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0280	15506	1	0	0	0	0	1	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0281	15507	1	0	0	1	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0282	15506	1	0	1	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0283	15500	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0284	15499	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0285	15499	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0286	15500	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP8_chr15_50419405_50519421	0/0	t0287	15494	1	1	0	0	0	0	copy fasta	USP8	chr15	50419405	50519421
USP9X_chrX_41080445_41241579	0/1	t0001	4879	97	15	17	52	4	8	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	1/0	t0002	4879	83	32	10	35	1	4	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0003	4880	31	7	2	14	1	7	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0004	4880	22	0	10	12	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0005	4879	13	1	1	6	0	5	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0006	4878	6	0	1	4	1	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0007	4879	5	2	1	0	1	1	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0008	4879	5	0	4	0	0	1	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0009	4879	3	0	2	0	1	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0010	4879	2	0	2	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0011	4881	2	2	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0012	4880	2	2	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0013	4879	1	1	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0014	4879	1	0	1	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0015	4878	1	0	0	0	0	1	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0016	4878	1	0	1	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0017	4878	1	0	0	1	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0018	4879	1	0	1	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0019	4879	1	1	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0020	4880	1	0	0	1	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0021	4879	1	1	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0022	4879	1	1	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0023	4879	1	1	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0024	4877	1	0	0	1	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0025	4880	1	0	0	0	0	1	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0026	4878	1	0	0	1	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0027	4880	1	1	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0028	4879	1	1	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0029	4881	1	0	0	1	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0030	4879	1	1	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579