JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
USP9X_chrX_41080445_41241579	0/0	t0031	4880	1	0	0	1	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0032	4878	1	1	0	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0033	4880	1	0	1	0	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9X_chrX_41080445_41241579	0/0	t0034	4877	1	0	0	1	0	0	copy fasta	USP9X	chrX	41080445	41241579
USP9Y_chrY_12696231_12865839	1/1	t0001	2369	126	17	17	70	5	15	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	t0002	2369	3	0	3	0	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	t0003	2369	1	0	0	0	0	1	copy fasta	USP9Y	chrY	12696231	12865839
USP9Y_chrY_12696231_12865839	0/0	t0004	2369	1	1	0	0	0	0	copy fasta	USP9Y	chrY	12696231	12865839
USPL1_chr13_30612920_30665766	1/0	t0001	1616	209	56	36	87	10	19	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/1	t0002	1616	48	1	11	17	3	15	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	t0003	1613	12	0	7	2	1	2	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	t0004	1616	8	8	0	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	t0005	1616	5	5	0	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	t0006	1616	5	0	0	5	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	t0007	1619	4	4	0	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	t0008	1609	4	4	0	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	t0009	1615	3	3	0	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	t0010	1616	1	0	0	1	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	t0011	1616	1	0	0	1	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	t0012	1616	1	1	0	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	t0013	1616	1	1	0	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	t0014	1616	1	0	1	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	t0015	1616	1	0	0	1	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	t0016	1613	1	0	1	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
USPL1_chr13_30612920_30665766	0/0	t0017	1613	1	1	0	0	0	0	copy fasta	USPL1	chr13	30612920	30665766
UST_chr6_148742030_149081990	0/0	t0001	3276	81	35	7	26	0	13	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	1/0	t0002	3276	44	5	9	21	2	6	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/1	t0003	3275	35	12	7	10	1	4	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0004	3275	11	1	2	7	1	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0005	3276	8	7	1	0	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0006	3276	5	0	4	0	0	1	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0007	3275	5	5	0	0	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0008	3276	2	0	2	0	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0009	3275	2	2	0	0	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0010	3276	1	0	0	1	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0011	3276	1	1	0	0	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0012	3276	1	1	0	0	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0013	3275	1	1	0	0	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0014	3276	1	1	0	0	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0015	3276	1	1	0	0	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0016	3276	1	1	0	0	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0017	3276	1	0	0	1	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0018	3276	1	1	0	0	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0019	3276	1	1	0	0	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0020	3276	1	0	0	0	0	1	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0021	3275	1	1	0	0	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0022	3275	1	1	0	0	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0023	3276	1	0	0	0	0	1	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0024	3276	1	0	0	1	0	0	copy fasta	UST	chr6	148742030	149081990
UST_chr6_148742030_149081990	0/0	t0025	3275	1	1	0	0	0	0	copy fasta	UST	chr6	148742030	149081990