JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UST_chr6_148742030_149081990	0/0	t0026	3276	1	0	0	1	0	0	copy fasta	UST	chr6	148742030	149081990
UTF1_chr10_133225217_133236558	0/1	t0001	189	245	34	50	110	13	37	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	1/0	t0002	189	85	0	18	53	3	10	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	t0003	189	56	50	6	0	0	0	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	t0004	189	8	7	1	0	0	0	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	t0005	189	5	1	3	0	0	1	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	t0006	189	3	0	0	2	0	1	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	t0007	189	1	0	0	0	0	1	copy fasta	UTF1	chr10	133225217	133236558
UTF1_chr10_133225217_133236558	0/0	t0008	189	1	0	0	1	0	0	copy fasta	UTF1	chr10	133225217	133236558
UTP11_chr1_38007734_38029820	0/1	t0001	1263	244	39	44	113	12	35	copy fasta	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	t0002	1262	55	18	10	24	2	1	copy fasta	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	1/0	t0003	1262	34	16	2	11	1	3	copy fasta	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	t0004	1263	17	17	0	0	0	0	copy fasta	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	t0005	1264	6	0	1	4	0	1	copy fasta	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	t0006	1263	3	0	1	0	1	1	copy fasta	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	t0007	1262	2	0	0	2	0	0	copy fasta	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	t0008	1278	1	0	0	1	0	0	copy fasta	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	t0009	1262	1	0	0	0	0	1	copy fasta	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	t0010	1263	1	0	1	0	0	0	copy fasta	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	t0011	1263	1	0	0	1	0	0	copy fasta	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	t0012	1263	1	0	1	0	0	0	copy fasta	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	t0013	1263	1	0	0	1	0	0	copy fasta	UTP11	chr1	38007734	38029820
UTP11_chr1_38007734_38029820	0/0	t0014	1264	1	0	0	1	0	0	copy fasta	UTP11	chr1	38007734	38029820
UTP14A_chrX_129901164_129934752	1/1	t0001	192	271	71	42	115	11	30	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	t0002	189	1	0	0	1	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14A_chrX_129901164_129934752	0/0	t0003	192	1	1	0	0	0	0	copy fasta	UTP14A	chrX	129901164	129934752
UTP14C_chr13_52019691_52038600	1/1	t0001	3229	167	49	22	72	2	20	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0002	3229	142	6	30	82	8	16	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0003	3229	47	7	15	15	4	6	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0004	3229	8	0	8	0	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0005	3229	5	5	0	0	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0006	3229	5	4	1	0	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0007	3229	3	0	0	3	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0008	3229	3	2	1	0	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0009	3229	2	2	0	0	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0010	3214	1	0	0	1	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0011	3229	1	0	0	1	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0012	3229	1	1	0	0	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0013	3229	1	1	0	0	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0014	3229	1	0	1	0	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0015	3229	1	1	0	0	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0016	3229	1	0	0	1	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0017	3229	1	1	0	0	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0018	3229	1	1	0	0	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP14C_chr13_52019691_52038600	0/0	t0019	3229	1	0	0	1	0	0	copy fasta	UTP14C	chr13	52019691	52038600
UTP15_chr5_73560743_73588380	0/0	t0001	3535	140	11	30	74	4	21	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	1/0	t0002	3540	91	23	20	31	4	12	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0003	3540	40	13	5	15	3	4	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0004	3540	34	6	12	9	4	3	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0005	3540	15	13	2	0	0	0	copy fasta	UTP15	chr5	73560743	73588380