JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UTP15_chr5_73560743_73588380	0/0	t0006	3540	9	7	2	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0007	3540	6	6	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0008	3536	4	0	1	3	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0009	3540	3	2	1	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0010	3535	2	0	0	2	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0011	3540	1	0	0	1	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0012	3541	1	0	1	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0013	3540	1	1	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0014	3540	1	1	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0015	3540	1	1	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0016	3535	1	1	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0017	3535	1	0	0	1	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0018	3535	1	0	0	1	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0019	3535	1	0	1	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0020	3535	1	0	1	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0021	3535	1	0	0	1	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0022	3535	1	0	0	1	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/1	t0023	3535	1	0	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0024	3535	1	0	0	1	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0025	3536	1	0	0	1	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0026	3535	1	0	0	0	1	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0027	3535	1	0	0	1	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0028	3489	1	1	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0029	3540	1	1	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0030	3540	1	1	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0031	3540	1	1	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP15_chr5_73560743_73588380	0/0	t0032	3540	1	1	0	0	0	0	copy fasta	UTP15	chr5	73560743	73588380
UTP18_chr17_51255546_51302933	1/1	t0001	206	366	94	76	136	14	44	copy fasta	UTP18	chr17	51255546	51302933
UTP20_chr12_101275105_101391618	0/1	t0001	674	161	60	17	60	7	16	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	t0002	674	76	10	12	41	3	10	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	t0003	675	32	7	5	16	0	4	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	1/0	t0004	674	30	2	13	8	2	4	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	t0005	675	23	1	7	4	4	7	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	t0006	673	11	1	4	6	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	t0007	675	11	2	3	5	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	t0008	675	5	0	2	1	0	2	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	t0009	674	4	1	2	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	t0010	675	1	0	0	0	0	1	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	t0011	674	1	0	0	1	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP20_chr12_101275105_101391618	0/0	t0012	674	1	0	1	0	0	0	copy fasta	UTP20	chr12	101275105	101391618
UTP23_chr8_116761524_116779684	0/0	t0001	2913	88	12	13	60	1	2	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/1	t0002	2922	74	6	23	20	8	16	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	t0003	2913	73	2	9	54	2	6	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	1/0	t0004	2923	59	42	3	1	2	10	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	t0005	2922	47	0	18	26	2	1	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	t0006	2922	22	19	3	0	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	t0007	2923	6	5	1	0	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	t0008	2923	2	2	0	0	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	t0009	2923	2	1	1	0	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	t0010	2923	2	2	0	0	0	0	copy fasta	UTP23	chr8	116761524	116779684