JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UTP23_chr8_116761524_116779684	0/0	t0011	2922	1	0	1	0	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	t0012	2922	1	0	0	1	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	t0013	2922	1	0	0	0	1	0	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	t0014	2922	1	0	0	1	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	t0015	2913	1	0	0	1	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	t0016	2913	1	0	0	1	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	t0017	2913	1	0	0	0	0	1	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	t0018	2923	1	0	0	1	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP23_chr8_116761524_116779684	0/0	t0019	2923	1	1	0	0	0	0	copy fasta	UTP23	chr8	116761524	116779684
UTP25_chr1_209822972_209862565	0/0	t0001	6211	96	21	9	50	4	12	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0002	6211	62	0	12	48	0	2	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0003	6210	41	1	12	21	1	6	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0004	6211	30	0	6	23	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0005	6209	28	0	8	13	4	3	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/1	t0006	6211	25	2	6	9	5	2	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0007	6212	11	10	1	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0008	6211	11	0	0	11	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0009	6209	6	0	0	5	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0010	6211	6	6	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0011	6211	6	0	6	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0012	6211	5	0	0	5	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0013	6211	5	5	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0014	6209	4	4	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0015	6209	4	4	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0016	6209	4	4	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0017	6211	4	4	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0018	6211	4	0	0	4	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0019	6212	3	3	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0020	6210	3	0	0	3	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0021	6211	3	0	2	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0022	6211	2	2	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0023	6211	2	0	0	2	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0024	6212	2	0	2	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0025	6211	2	1	1	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0026	6211	2	2	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0027	6209	2	0	0	0	1	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0028	6211	2	2	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0029	6211	2	2	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0030	6210	2	0	0	0	2	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0031	6210	2	0	0	2	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0032	6211	2	0	0	2	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	1/0	t0033	6211	2	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0034	6212	2	0	1	1	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0035	6211	2	0	2	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0036	6211	2	0	0	0	1	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0037	6210	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0038	6212	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0039	6212	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0040	6212	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0041	6209	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565