JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UTP25_chr1_209822972_209862565	0/0	t0042	6211	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0043	6209	1	0	0	1	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0044	6209	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0045	6209	1	0	0	1	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0046	6209	1	0	1	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0047	6209	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0048	6210	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0049	6211	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0050	6211	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0051	6209	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0052	6211	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0053	6210	1	0	1	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0054	6210	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0055	6210	1	0	0	1	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0056	6211	1	0	0	1	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0057	6211	1	0	0	1	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0058	6211	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0059	6211	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0060	6211	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0061	6211	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0062	6211	1	0	0	1	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0063	6211	1	0	0	1	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0064	6212	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0065	6211	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0066	6211	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0067	6211	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0068	6211	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0069	6211	1	0	0	1	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0070	6211	1	0	1	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0071	6211	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0072	6211	1	0	0	0	0	1	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0073	6211	1	0	1	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0074	6211	1	1	0	0	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP25_chr1_209822972_209862565	0/0	t0075	6211	1	0	0	1	0	0	copy fasta	UTP25	chr1	209822972	209862565
UTP3_chr4_70683532_70695551	1/1	t0001	581	301	65	64	129	11	30	copy fasta	UTP3	chr4	70683532	70695551
UTP3_chr4_70683532_70695551	0/0	t0002	581	28	0	7	9	5	7	copy fasta	UTP3	chr4	70683532	70695551
UTP3_chr4_70683532_70695551	0/0	t0003	581	13	12	1	0	0	0	copy fasta	UTP3	chr4	70683532	70695551
UTP3_chr4_70683532_70695551	0/0	t0004	581	10	7	0	0	0	3	copy fasta	UTP3	chr4	70683532	70695551
UTP3_chr4_70683532_70695551	0/0	t0005	581	4	4	0	0	0	0	copy fasta	UTP3	chr4	70683532	70695551
UTP3_chr4_70683532_70695551	0/0	t0006	665	3	3	0	0	0	0	copy fasta	UTP3	chr4	70683532	70695551
UTP3_chr4_70683532_70695551	0/0	t0007	581	3	3	0	0	0	0	copy fasta	UTP3	chr4	70683532	70695551
UTP4_chr16_69127649_69174021	1/1	t0001	128	289	94	57	86	12	38	copy fasta	UTP4	chr16	69127649	69174021
UTP4_chr16_69127649_69174021	0/0	t0002	128	3	0	1	0	2	0	copy fasta	UTP4	chr16	69127649	69174021
UTP6_chr17_31855904_31906708	0/0	t0001	2537	133	33	22	56	7	15	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0002	2537	48	11	5	23	2	7	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/1	t0003	2538	45	8	6	25	2	3	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0004	2538	31	17	10	2	0	2	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0005	2536	11	9	2	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0006	2537	10	2	4	0	0	4	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0007	2537	7	0	3	0	1	3	copy fasta	UTP6	chr17	31855904	31906708