JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UTP6_chr17_31855904_31906708	0/0	t0008	2537	6	6	0	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0009	2537	5	0	0	5	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0010	2537	5	0	0	5	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0011	2537	4	4	0	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0012	2537	3	2	1	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	1/0	t0013	2537	2	1	0	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0014	2538	2	2	0	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0015	2537	1	0	0	1	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0016	2537	1	0	1	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0017	1808	1	0	0	0	0	1	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0018	2537	1	0	0	1	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0019	2538	1	0	1	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0020	2538	1	0	0	0	0	1	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0021	2538	1	0	0	1	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0022	2537	1	0	0	1	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0023	2537	1	0	1	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0024	2537	1	0	0	1	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0025	2538	1	1	0	0	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTP6_chr17_31855904_31906708	0/0	t0026	2537	1	0	0	1	0	0	copy fasta	UTP6	chr17	31855904	31906708
UTRN_chr6_144280335_144858034	0/0	t0001	2617	17	13	2	1	0	1	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0002	2617	16	8	6	1	0	1	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	1/0	t0003	2617	14	2	4	3	1	3	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0004	2617	10	0	2	5	1	2	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0005	2617	10	6	3	0	0	1	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0006	2617	8	6	1	1	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/1	t0007	2617	6	0	1	4	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0008	2621	5	0	1	3	0	1	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0009	2617	5	5	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0010	2621	5	0	0	5	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0011	2617	4	3	1	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0012	2617	4	3	1	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0013	2617	3	3	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0014	2617	3	2	1	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0015	2617	2	2	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0016	2617	2	2	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0017	2621	2	0	0	2	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0018	2617	2	0	0	2	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0019	2617	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0020	2617	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0021	2617	1	0	0	1	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0022	2617	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0023	2617	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0024	2617	1	0	1	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0025	2617	1	0	0	0	0	1	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0026	2617	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0027	2617	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTRN_chr6_144280335_144858034	0/0	t0028	2617	1	1	0	0	0	0	copy fasta	UTRN	chr6	144280335	144858034
UTS2B_chr3_191262168_191335526	0/0	t0001	2026	34	0	4	27	0	3	copy fasta	UTS2B	chr3	191262168	191335526
UTS2B_chr3_191262168_191335526	0/0	t0002	2026	33	4	4	21	0	4	copy fasta	UTS2B	chr3	191262168	191335526
UTS2B_chr3_191262168_191335526	0/0	t0003	2026	29	17	3	8	0	1	copy fasta	UTS2B	chr3	191262168	191335526