JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UTS2R_chr17_82366765_82382458	0/0	t0028	2516	1	1	0	0	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	t0029	2516	1	1	0	0	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	t0030	2516	1	1	0	0	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2R_chr17_82366765_82382458	0/0	t0031	2516	1	1	0	0	0	0	copy fasta	UTS2R	chr17	82366765	82382458
UTS2_chr1_7842612_7858065	1/1	t0001	217	444	82	69	232	16	43	copy fasta	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	t0002	218	22	12	7	0	0	3	copy fasta	UTS2	chr1	7842612	7858065
UTS2_chr1_7842612_7858065	0/0	t0003	217	2	2	0	0	0	0	copy fasta	UTS2	chr1	7842612	7858065
UTY_chrY_13243385_13485033	1/1	t0001	1840	125	18	19	65	5	16	copy fasta	UTY	chrY	13243385	13485033
UTY_chrY_13243385_13485033	0/0	t0002	1840	1	0	0	1	0	0	copy fasta	UTY	chrY	13243385	13485033
UVRAG_chr11_75810210_76149232	1/1	t0001	3018	60	22	10	19	1	6	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0002	3018	24	3	2	13	0	6	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0003	3018	6	6	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0004	3019	5	1	0	0	0	4	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0005	3018	5	2	0	0	0	3	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0006	3018	4	4	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0007	3018	4	4	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0008	3019	2	2	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0009	3018	2	2	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0010	3018	2	0	0	2	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0011	3018	2	2	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0012	3018	2	2	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0013	3018	2	2	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0014	3018	2	2	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0015	3036	1	0	0	1	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0016	3018	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0017	3019	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0018	3018	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0019	3019	1	0	0	0	0	1	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0020	3017	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0021	3018	1	0	0	0	0	1	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0022	3017	1	0	0	0	1	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0023	3019	1	0	0	1	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0024	3018	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0025	3018	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0026	3018	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0027	3018	1	0	1	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0028	3018	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0029	3018	1	0	0	1	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0030	3018	1	0	0	0	0	1	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0031	3018	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0032	3018	1	0	0	1	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0033	3019	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0034	3019	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0035	3017	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0036	3018	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0037	3018	1	1	0	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVRAG_chr11_75810210_76149232	0/0	t0038	3018	1	0	1	0	0	0	copy fasta	UVRAG	chr11	75810210	76149232
UVSSA_chr4_1342208_1393049	0/0	t0001	2646	122	20	6	80	0	16	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	1/1	t0002	2644	81	5	19	39	7	9	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0003	2644	45	3	17	15	5	5	copy fasta	UVSSA	chr4	1342208	1393049