JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UVSSA_chr4_1342208_1393049	0/0	t0004	2646	44	22	8	10	1	3	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0005	2646	14	0	9	5	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0006	2645	10	10	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0007	2646	8	0	2	0	0	6	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0008	2646	6	0	4	0	0	2	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0009	2645	4	4	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0010	2646	4	3	1	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0011	2646	4	0	4	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0012	2643	3	1	0	2	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0013	2645	3	3	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0014	2645	3	3	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0015	2649	3	0	0	1	0	2	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0016	2645	2	1	1	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0017	2643	2	0	0	1	1	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0018	2644	2	0	2	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0019	2643	2	0	0	2	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0020	2645	2	2	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0021	2645	2	2	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0022	2645	2	1	0	0	1	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0023	2644	2	0	0	0	0	2	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0024	2645	2	0	2	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0025	2646	2	1	1	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0026	2646	2	0	0	2	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0027	2644	1	0	0	0	1	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0028	2644	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0029	2644	1	0	0	1	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0030	2644	1	0	0	0	0	1	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0031	2644	1	0	0	1	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0032	2645	1	0	1	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0033	2645	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0034	2631	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0035	2644	1	0	1	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0036	2645	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0037	2644	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0038	2644	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0039	2646	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0040	2646	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0041	2646	1	0	1	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0042	2645	1	0	0	1	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0043	2646	1	0	0	1	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0044	2646	1	0	0	1	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0045	2646	1	0	0	1	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0046	2645	1	0	1	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0047	2645	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0048	2644	1	0	0	1	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0049	2646	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UVSSA_chr4_1342208_1393049	0/0	t0050	2645	1	1	0	0	0	0	copy fasta	UVSSA	chr4	1342208	1393049
UXS1_chr2_106088311_106199301	0/1	t0001	776	255	49	56	105	12	32	copy fasta	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	t0002	776	25	0	0	21	0	4	copy fasta	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	t0003	776	11	11	0	0	0	0	copy fasta	UXS1	chr2	106088311	106199301