JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C14orf132_chr14_96034362_96098971	0/0	t0034	7376	1	0	0	0	0	1	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0035	7377	1	0	0	1	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0036	7376	1	1	0	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0037	7376	1	1	0	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0038	7377	1	0	1	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0039	7376	1	1	0	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0040	7376	1	0	1	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0041	7377	1	1	0	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0042	7376	1	1	0	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0043	7376	1	1	0	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	1/0	t0044	7376	1	0	0	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0045	7376	1	0	1	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0046	7376	1	0	0	1	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0047	7376	1	1	0	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0048	7376	1	0	0	0	0	1	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0049	7376	1	0	0	1	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0050	7376	1	1	0	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0051	7376	1	1	0	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0052	7376	1	0	0	0	0	1	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/1	t0053	7376	1	0	0	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0054	7377	1	0	1	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0055	7377	1	0	1	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0056	7377	1	1	0	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0057	7377	1	0	0	0	0	1	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0058	7377	1	0	0	1	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0059	7377	1	0	0	1	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0060	7377	1	0	1	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0061	7377	1	0	0	1	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0062	7377	1	0	0	1	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0063	7376	1	1	0	0	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf132_chr14_96034362_96098971	0/0	t0064	7376	1	0	0	1	0	0	copy fasta	C14orf132	chr14	96034362	96098971
C14orf180_chr14_104574764_104595515	0/0	t0001	1981	136	16	33	77	2	8	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/0	t0002	1988	87	1	12	55	3	16	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/0	t0003	1982	20	6	6	0	2	6	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/0	t0004	1981	17	0	0	17	0	0	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/0	t0005	1989	15	0	7	6	1	1	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/0	t0006	1988	13	1	1	8	0	3	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/0	t0007	1980	13	12	1	0	0	0	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/0	t0008	1980	12	10	2	0	0	0	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/0	t0009	1981	11	11	0	0	0	0	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/0	t0010	1988	10	2	4	0	3	1	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/0	t0011	1982	10	0	5	0	1	4	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/0	t0012	1989	8	5	1	0	1	1	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/0	t0013	1982	6	3	0	0	2	1	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/0	t0014	1989	5	1	2	2	0	0	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/1	t0015	1989	4	0	1	0	1	1	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/0	t0016	1980	4	0	0	4	0	0	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/0	t0017	1981	4	4	0	0	0	0	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/0	t0018	1987	4	4	0	0	0	0	copy fasta	C14orf180	chr14	104574764	104595515
C14orf180_chr14_104574764_104595515	0/0	t0019	1989	3	0	0	3	0	0	copy fasta	C14orf180	chr14	104574764	104595515