JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
UXS1_chr2_106088311_106199301	0/0	t0004	776	3	3	0	0	0	0	copy fasta	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	t0005	774	3	3	0	0	0	0	copy fasta	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	t0006	776	2	2	0	0	0	0	copy fasta	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	t0007	776	1	0	0	1	0	0	copy fasta	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	t0008	776	1	0	0	1	0	0	copy fasta	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	t0009	776	1	1	0	0	0	0	copy fasta	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	0/0	t0010	776	1	1	0	0	0	0	copy fasta	UXS1	chr2	106088311	106199301
UXS1_chr2_106088311_106199301	1/0	t0011	776	1	0	0	0	0	0	copy fasta	UXS1	chr2	106088311	106199301
UXT_chrX_47646796_47664180	1/1	t0001	122	289	78	47	129	11	22	copy fasta	UXT	chrX	47646796	47664180
UXT_chrX_47646796_47664180	0/0	t0002	123	1	0	0	1	0	0	copy fasta	UXT	chrX	47646796	47664180
VAC14_chr16_70682439_70806158	1/0	t0001	748	206	39	46	89	8	23	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/1	t0002	746	81	11	18	36	7	8	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	t0003	748	8	7	1	0	0	0	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	t0004	740	8	7	1	0	0	0	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	t0005	750	8	6	0	0	1	1	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	t0006	748	7	7	0	0	0	0	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	t0007	740	1	1	0	0	0	0	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	t0008	750	1	1	0	0	0	0	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	t0009	746	1	1	0	0	0	0	copy fasta	VAC14	chr16	70682439	70806158
VAC14_chr16_70682439_70806158	0/0	t0010	748	1	0	0	1	0	0	copy fasta	VAC14	chr16	70682439	70806158
VAMP1_chr12_6457237_6475677	0/0	t0001	2380	128	14	16	77	3	18	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0002	2380	118	24	37	43	2	12	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/1	t0003	2380	105	3	16	66	9	10	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0004	2380	23	7	7	2	2	5	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0005	2380	20	18	2	0	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0006	2380	10	10	0	0	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0007	2380	9	0	5	4	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0008	2380	4	4	0	0	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0009	2380	4	0	0	4	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0010	2380	2	2	0	0	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0011	2380	2	0	1	0	0	1	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0012	2379	2	2	0	0	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	1/0	t0013	2380	1	0	0	0	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0014	2380	1	0	0	0	1	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0015	2380	1	0	0	1	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0016	2380	1	1	0	0	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0017	2380	1	0	1	0	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0018	2380	1	1	0	0	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0019	2379	1	1	0	0	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0020	2380	1	1	0	0	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0021	2380	1	0	1	0	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0022	2380	1	1	0	0	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0023	2380	1	0	0	0	1	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0024	2380	1	0	0	0	0	1	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0025	2380	1	0	0	1	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0026	2380	1	1	0	0	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0027	2380	1	0	0	0	0	1	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0028	2380	1	1	0	0	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0029	2380	1	0	0	1	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP1_chr12_6457237_6475677	0/0	t0030	2380	1	1	0	0	0	0	copy fasta	VAMP1	chr12	6457237	6475677