JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VAMP1_chr12_6457237_6475677	0/0	t0031	2380	1	0	0	1	0	0	copy fasta	VAMP1	chr12	6457237	6475677
VAMP2_chr17_8154149_8167948	0/0	t0001	1778	62	8	2	52	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/1	t0002	1788	43	12	13	11	2	4	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0003	1789	41	11	9	11	2	8	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0004	1788	20	0	1	17	1	1	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	1/0	t0005	1776	19	8	7	0	0	3	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0006	1787	16	2	7	1	2	4	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0007	1778	15	1	2	12	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0008	1789	14	0	4	7	0	3	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0009	1790	14	2	7	2	2	1	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0010	1787	14	0	3	8	0	3	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0011	1777	11	0	4	1	2	4	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0012	1776	10	10	0	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0013	1779	9	0	1	8	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0014	1781	9	0	0	9	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0015	1776	9	5	1	3	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0016	1777	6	5	0	1	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0017	1790	6	0	2	3	0	1	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0018	1786	6	0	1	2	0	3	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0019	1776	5	5	0	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0020	1778	5	0	4	0	1	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0021	1775	5	3	0	0	0	2	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0022	1794	4	0	2	2	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0023	1791	4	0	0	4	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0024	1790	4	0	2	2	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0025	1792	4	1	0	3	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0026	1777	4	3	1	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0027	1779	3	1	0	2	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0028	1777	3	0	0	3	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0029	1778	3	0	0	3	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0030	1789	3	0	0	3	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0031	1776	3	0	0	3	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0032	1776	3	3	0	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0033	1779	2	0	0	1	0	1	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0034	1789	2	0	2	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0035	1779	1	0	0	1	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0036	1776	1	0	1	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0037	1789	1	0	0	1	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0038	1778	1	1	0	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0039	1776	1	0	1	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0040	1788	1	0	0	1	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0041	1800	1	0	0	1	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0042	1795	1	0	1	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0043	1793	1	0	0	1	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0044	1791	1	1	0	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0045	1791	1	0	0	1	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0046	1787	1	1	0	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0047	1792	1	0	0	1	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0048	1786	1	1	0	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0049	1785	1	1	0	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948