JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VAMP2_chr17_8154149_8167948	0/0	t0050	1788	1	0	0	1	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0051	1788	1	0	0	0	0	1	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0052	1786	1	0	1	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0053	1790	1	0	1	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0054	1788	1	0	0	0	1	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0055	1789	1	0	0	1	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0056	1788	1	0	0	1	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0057	1777	1	1	0	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0058	1777	1	1	0	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0059	1788	1	0	0	1	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0060	1776	1	1	0	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0061	1775	1	0	0	0	0	1	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0062	1789	1	0	0	0	1	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0063	1792	1	0	0	1	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0064	1789	1	0	0	1	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0065	1788	1	0	0	1	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0066	1790	1	1	0	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP2_chr17_8154149_8167948	0/0	t0067	1793	1	1	0	0	0	0	copy fasta	VAMP2	chr17	8154149	8167948
VAMP3_chr1_7766296_7786432	0/0	t0001	1876	333	60	46	197	7	23	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	1/1	t0002	1876	41	9	16	6	2	6	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0003	1876	19	1	3	11	4	0	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0004	1876	12	0	1	6	0	5	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0005	1876	10	8	2	0	0	0	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0006	1876	6	0	3	0	3	0	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0007	1876	6	6	0	0	0	0	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0008	1876	3	0	3	0	0	0	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0009	1876	3	3	0	0	0	0	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0010	1876	3	3	0	0	0	0	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0011	1876	1	1	0	0	0	0	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0012	1876	1	0	0	1	0	0	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0013	1876	1	0	0	0	0	1	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0014	1876	1	1	0	0	0	0	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0015	1876	1	0	0	1	0	0	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0016	1876	1	1	0	0	0	0	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0017	1876	1	1	0	0	0	0	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0018	1876	1	1	0	0	0	0	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0019	1876	1	1	0	0	0	0	copy fasta	VAMP3	chr1	7766296	7786432
VAMP3_chr1_7766296_7786432	0/0	t0020	1876	1	0	0	0	0	1	copy fasta	VAMP3	chr1	7766296	7786432
VAMP4_chr1_171695160_171747065	0/1	t0001	4552	44	7	6	27	2	1	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0002	4559	31	4	4	20	3	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0003	4554	24	7	4	10	0	3	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0004	4556	18	7	3	7	0	1	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0005	4545	13	0	0	11	0	2	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0006	4548	11	1	3	3	1	3	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0007	4543	11	0	1	10	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0008	4552	8	6	1	0	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0009	4554	8	0	0	7	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0010	4556	8	0	1	7	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0011	4547	7	0	2	5	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0012	4538	6	0	1	5	0	0	copy fasta	VAMP4	chr1	171695160	171747065