JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VAMP4_chr1_171695160_171747065	0/0	t0013	4552	6	0	0	6	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0014	4554	6	0	0	6	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0015	4561	5	0	0	3	0	2	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0016	4550	5	0	2	2	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0017	4549	5	0	0	3	0	2	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0018	4558	5	1	1	2	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0019	4557	4	1	1	0	1	1	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0020	4546	4	1	2	1	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0021	4548	4	0	2	1	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0022	4560	4	0	1	3	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0023	4536	4	2	2	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0024	4575	3	1	1	1	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0025	4579	3	0	0	3	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0026	4536	3	3	0	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0027	4550	3	0	0	1	1	1	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0028	4540	3	0	2	1	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0029	4560	3	0	0	2	0	1	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0030	4562	3	1	0	2	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0031	4550	3	0	0	3	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0032	4553	2	0	1	0	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0033	4557	2	2	0	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0034	4547	2	0	2	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0035	4552	2	2	0	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0036	4524	2	2	0	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0037	4538	2	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0038	4542	2	0	0	0	1	1	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0039	4540	2	2	0	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0040	4545	2	0	0	1	0	1	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0041	4552	2	0	0	2	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0042	4556	2	2	0	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0043	4552	2	2	0	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0044	4562	2	0	0	2	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0045	4564	2	0	0	1	0	1	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0046	4534	2	0	0	0	0	2	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0047	4524	2	2	0	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0048	4552	1	0	0	1	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0049	4564	1	0	0	1	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0050	4585	1	1	0	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0051	4559	1	0	0	1	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0052	4553	1	0	0	0	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0053	4563	1	0	0	1	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0054	4555	1	0	0	1	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0055	4551	1	0	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0056	4549	1	0	0	1	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0057	4545	1	0	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0058	4559	1	0	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0059	4557	1	0	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0060	4548	1	1	0	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0061	4544	1	1	0	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0062	4546	1	1	0	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065