JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
VAMP4_chr1_171695160_171747065	0/0	t0063	4552	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0064	4530	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0065	4550	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0066	4564	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0067	4562	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0068	4560	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0069	4590	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0070	4534	1	0	0	0	1	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0071	4538	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0072	4536	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0073	4542	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0074	4538	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0075	4540	1	0	1	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0076	4544	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0077	4544	1	0	0	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0078	4548	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0079	4548	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0080	4548	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0081	4536	1	0	0	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0082	4546	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0083	4541	1	0	0	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0084	4539	1	0	1	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0085	4552	1	0	0	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0086	4552	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0087	4549	1	0	0	0	1	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0088	4550	1	0	0	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0089	4547	1	0	1	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0090	4554	1	0	0	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0091	4554	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0092	4554	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0093	4549	1	0	1	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0094	4556	1	0	0	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0095	4556	1	0	0	0	1	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0096	4556	1	0	0	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0097	4560	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0098	4560	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0099	4547	1	0	0	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0100	4558	1	0	0	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0101	4558	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0102	4562	1	0	0	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0103	4549	1	0	0	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0104	4564	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0105	4566	1	0	0	0	1	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0106	4570	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0107	4536	1	0	0	0	1	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0108	4534	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0109	4544	1	1	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0110	4550	1	0	0	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0111	4552	1	0	0	1	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	1/0	t0112	4552	1	0	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065