JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VAMP4_chr1_171695160_171747065	0/0	t0113	4532	1	1	0	0	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0114	4532	1	0	0	0	0	1	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0115	4530	1	0	0	1	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP4_chr1_171695160_171747065	0/0	t0116	4548	1	0	0	1	0	0	copy fasta	VAMP4	chr1	171695160	171747065
VAMP5_chr2_85579431_85598406	1/1	t0001	310	264	39	62	113	11	37	copy fasta	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/0	t0002	310	81	14	3	59	0	5	copy fasta	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/0	t0003	310	41	28	5	5	1	2	copy fasta	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/0	t0004	310	20	8	0	10	1	1	copy fasta	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/0	t0005	310	11	1	6	0	1	3	copy fasta	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/0	t0006	310	7	3	4	0	0	0	copy fasta	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/0	t0007	310	5	2	2	1	0	0	copy fasta	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/0	t0008	310	2	1	0	1	0	0	copy fasta	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/0	t0009	310	2	2	0	0	0	0	copy fasta	VAMP5	chr2	85579431	85598406
VAMP5_chr2_85579431_85598406	0/0	t0010	310	1	0	0	1	0	0	copy fasta	VAMP5	chr2	85579431	85598406
VAMP7_chrX_155876345_155948769	1/1	t0001	1932	162	55	24	69	3	9	copy fasta	VAMP7	chrX	155876345	155948769
VAMP7_chrX_155876345_155948769	0/0	t0002	1932	17	1	10	2	3	1	copy fasta	VAMP7	chrX	155876345	155948769
VAMP7_chrX_155876345_155948769	0/0	t0003	1932	1	1	0	0	0	0	copy fasta	VAMP7	chrX	155876345	155948769
VAMP7_chrX_155876345_155948769	0/0	t0004	1932	1	1	0	0	0	0	copy fasta	VAMP7	chrX	155876345	155948769
VAMP7_chrX_155876345_155948769	0/0	t0005	1932	1	0	0	1	0	0	copy fasta	VAMP7	chrX	155876345	155948769
VAMP7_chrX_155876345_155948769	0/0	t0006	1932	1	1	0	0	0	0	copy fasta	VAMP7	chrX	155876345	155948769
VAMP7_chrX_155876345_155948769	0/0	t0007	1932	1	0	0	1	0	0	copy fasta	VAMP7	chrX	155876345	155948769
VAMP8_chr2_85572586_85587031	1/1	t0001	377	227	35	52	101	8	29	copy fasta	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	t0002	377	185	46	26	86	6	21	copy fasta	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	t0003	377	11	11	0	0	0	0	copy fasta	VAMP8	chr2	85572586	85587031
VAMP8_chr2_85572586_85587031	0/0	t0004	377	1	0	0	1	0	0	copy fasta	VAMP8	chr2	85572586	85587031
VANGL1_chr1_115636970_115703221	0/0	t0001	7097	66	19	14	28	4	1	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	1/0	t0002	7097	58	13	14	20	4	6	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0003	7096	53	4	10	29	5	5	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0004	7098	34	11	4	18	0	1	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0005	7097	24	1	4	16	0	3	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0006	7097	17	0	1	9	3	4	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0007	7096	15	0	1	9	1	4	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/1	t0008	7096	11	4	2	2	0	2	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0009	7096	9	7	2	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0010	7097	8	0	0	8	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0011	7092	7	0	0	7	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0012	7098	7	0	7	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0013	7097	6	0	0	6	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0014	7098	6	5	1	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0015	7098	5	0	1	3	0	1	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0016	7096	5	5	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0017	7096	5	5	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0018	7098	5	3	0	1	0	1	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0019	7092	4	0	0	4	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0020	7097	4	0	0	4	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0021	7097	3	0	0	3	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0022	7098	3	0	0	3	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0023	7097	3	3	0	0	0	0	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0024	7097	2	0	0	0	0	2	copy fasta	VANGL1	chr1	115636970	115703221
VANGL1_chr1_115636970_115703221	0/0	t0025	7092	2	0	0	2	0	0	copy fasta	VANGL1	chr1	115636970	115703221