JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VAPB_chr20_58384229_58456101	0/0	t0006	7073	14	8	0	4	0	2	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0007	7090	12	1	4	0	3	4	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/1	t0008	7090	9	1	3	3	1	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0009	7074	8	0	0	7	0	1	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0010	7099	8	1	5	0	2	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0011	7088	7	2	1	4	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0012	7092	7	6	1	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0013	7088	6	4	1	0	0	1	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0014	7090	6	5	1	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0015	7092	6	3	1	2	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0016	7089	5	0	0	5	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0017	7086	4	4	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0018	7072	3	3	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0019	7086	3	3	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0020	7086	3	0	0	3	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0021	7088	3	3	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0022	7094	3	0	0	3	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0023	7073	3	3	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0024	7088	2	2	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0025	7090	2	2	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0026	7102	2	1	0	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0027	7090	2	0	0	2	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0028	7099	2	0	1	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0029	7093	2	0	1	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0030	7075	2	1	0	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0031	7074	1	0	0	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0032	7090	1	0	0	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0033	7102	1	0	0	0	0	1	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0034	7072	1	0	1	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0035	7090	1	0	0	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0036	7086	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0037	7086	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0038	7088	1	0	0	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0039	7090	1	0	1	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0040	7092	1	0	0	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0041	7072	1	0	0	0	0	1	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0042	7088	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0043	7098	1	0	0	0	0	1	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0044	7092	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0045	7098	1	0	0	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0046	7090	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0047	7090	1	0	0	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0048	7090	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0049	7090	1	0	0	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0050	7090	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0051	7090	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0052	7090	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0053	7090	1	0	0	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0054	7090	1	0	0	0	0	1	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0055	7100	1	0	0	1	0	0	copy fasta	VAPB	chr20	58384229	58456101