JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VAPB_chr20_58384229_58456101	0/0	t0056	7092	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0057	7094	1	0	0	0	0	1	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0058	7094	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0059	7072	1	0	1	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0060	7072	1	0	0	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0061	7090	1	0	1	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0062	7090	1	0	0	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0063	7098	1	0	1	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0064	7090	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0065	7097	1	0	0	0	0	1	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0066	7097	1	0	0	0	0	1	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0067	7107	1	0	1	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0068	7088	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0069	7073	1	0	1	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0070	7087	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0071	7087	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0072	7073	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0073	7073	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0074	7089	1	0	0	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0075	7091	1	0	0	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0076	7093	1	1	0	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0077	7103	1	0	0	0	0	1	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0078	7093	1	0	0	1	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0079	7091	1	0	1	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VAPB_chr20_58384229_58456101	0/0	t0080	7098	1	0	1	0	0	0	copy fasta	VAPB	chr20	58384229	58456101
VARS1_chr6_31772518_31800752	0/1	t0001	317	401	96	82	166	18	38	copy fasta	VARS1	chr6	31772518	31800752
VARS2_chr6_30909238_30931459	0/1	t0001	384	416	92	77	182	18	46	copy fasta	VARS2	chr6	30909238	30931459
VARS2_chr6_30909238_30931459	0/0	t0002	384	1	0	1	0	0	0	copy fasta	VARS2	chr6	30909238	30931459
VASH1_chr14_76756468_76788015	0/0	t0001	5352	80	8	22	36	5	9	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/1	t0002	5352	71	28	21	11	4	6	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0003	5352	70	8	13	28	2	19	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0004	5352	45	7	1	31	2	4	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	1/0	t0005	5352	38	7	6	20	1	3	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0006	5352	18	1	6	11	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0007	5352	11	5	1	5	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0008	5352	9	0	0	9	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0009	5352	9	1	4	0	1	3	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0010	5356	7	0	0	7	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0011	5352	6	5	1	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0012	5352	4	1	0	3	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0013	5352	4	0	0	4	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0014	5352	4	0	0	4	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0015	5341	4	4	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0016	5349	3	0	0	3	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0017	5352	3	2	1	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0018	5352	2	0	1	0	0	1	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0019	5341	2	1	1	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0020	5352	2	0	0	2	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0021	5352	2	0	0	2	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0022	5341	2	2	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015