JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VASH1_chr14_76756468_76788015	0/0	t0023	5352	2	2	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0024	5352	2	2	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0025	5352	1	0	0	1	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0026	5352	1	0	0	0	0	1	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0027	5356	1	0	0	1	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0028	5352	1	0	0	1	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0029	5352	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0030	5352	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0031	5352	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0032	5352	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0033	5352	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0034	5352	1	0	0	0	0	1	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0035	5352	1	0	0	1	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0036	5352	1	0	0	1	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0037	5352	1	0	0	1	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0038	5352	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0039	5352	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0040	5352	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0041	5352	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0042	5352	1	0	0	0	0	1	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0043	5352	1	0	0	1	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0044	5352	1	0	1	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0045	5352	1	0	0	1	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0046	5352	1	0	0	0	0	1	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0047	5352	1	0	1	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0048	5352	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0049	5352	1	0	0	0	1	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0050	5356	1	0	0	1	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0051	5352	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0052	5352	1	0	0	1	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0053	5341	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0054	5352	1	0	0	0	0	1	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0055	5352	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH1_chr14_76756468_76788015	0/0	t0056	5352	1	1	0	0	0	0	copy fasta	VASH1	chr14	76756468	76788015
VASH2_chr1_212945541_212996585	0/1	t0001	3410	87	2	19	54	4	7	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0002	3410	67	1	6	46	5	9	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0003	3410	61	34	9	18	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0004	3410	37	1	10	18	2	6	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0005	3410	13	9	2	0	0	2	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0006	3410	8	0	3	3	2	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0007	3410	8	3	1	3	0	1	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	1/0	t0008	3406	7	6	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0009	3410	7	7	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0010	3410	4	4	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0011	3410	4	0	0	4	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0012	3410	4	0	0	4	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0013	3410	4	4	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0014	3409	3	0	1	2	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0015	3410	3	0	0	3	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0016	3410	3	0	0	3	0	0	copy fasta	VASH2	chr1	212945541	212996585