JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VASH2_chr1_212945541_212996585	0/0	t0017	3410	3	3	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0018	3410	3	0	3	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0019	3410	2	1	1	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0020	3410	2	0	0	2	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0021	3410	2	0	0	2	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0022	3410	2	2	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0023	3409	2	1	0	0	0	1	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0024	3410	2	0	0	0	1	1	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0025	3410	2	0	2	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0026	3409	2	0	0	2	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0027	3410	2	2	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0028	3410	2	0	0	2	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0029	3410	2	1	0	0	0	1	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0030	3409	2	0	2	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0031	3410	2	2	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0032	3410	2	2	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0033	3410	1	0	0	1	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0034	3410	1	0	0	1	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0035	3410	1	0	1	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0036	3378	1	0	0	0	0	1	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0037	3410	1	0	0	1	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0038	3410	1	1	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0039	3410	1	0	0	1	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0040	3410	1	0	0	1	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0041	3409	1	0	1	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0042	3410	1	0	1	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0043	3409	1	0	1	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0044	3410	1	1	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0045	3410	1	1	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0046	3409	1	1	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0047	3409	1	1	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0048	3410	1	1	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0049	3410	1	0	0	1	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0050	3410	1	1	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0051	3410	1	0	1	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0052	3406	1	1	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0053	3410	1	0	0	0	0	1	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0054	3410	1	1	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0055	3410	1	1	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASH2_chr1_212945541_212996585	0/0	t0056	3410	1	1	0	0	0	0	copy fasta	VASH2	chr1	212945541	212996585
VASN_chr16_4366848_4388538	0/1	t0001	795	330	74	78	123	12	42	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	t0002	795	18	18	0	0	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	t0003	795	4	4	0	0	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	t0004	795	1	1	0	0	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	t0005	795	1	1	0	0	0	0	copy fasta	VASN	chr16	4366848	4388538
VASN_chr16_4366848_4388538	0/0	t0006	795	1	0	0	1	0	0	copy fasta	VASN	chr16	4366848	4388538
VASP_chr19_45502479_45531983	0/0	t0001	1100	259	76	35	108	9	31	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	1/1	t0002	1100	67	9	19	27	5	5	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	t0003	1099	61	3	15	40	0	3	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	t0004	1100	5	3	1	0	0	1	copy fasta	VASP	chr19	45502479	45531983