JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VASP_chr19_45502479_45531983	0/0	t0005	1100	3	0	0	3	0	0	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	t0006	1100	3	2	1	0	0	0	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	t0007	1100	2	0	0	0	0	2	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	t0008	1100	2	0	0	0	0	2	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	t0009	1099	1	0	1	0	0	0	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	t0010	1100	1	1	0	0	0	0	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	t0011	1100	1	1	0	0	0	0	copy fasta	VASP	chr19	45502479	45531983
VASP_chr19_45502479_45531983	0/0	t0012	1100	1	1	0	0	0	0	copy fasta	VASP	chr19	45502479	45531983
VAT1L_chr16_77783564_77985107	0/0	t0001	2532	81	4	15	50	3	9	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0002	2532	59	5	14	32	3	5	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/1	t0003	2532	55	0	13	29	3	9	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0004	2532	37	30	1	4	0	2	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0005	2532	23	6	4	8	1	4	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	1/0	t0006	2532	9	8	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0007	2532	9	8	1	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0008	2532	8	0	1	0	1	6	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0009	2532	7	6	1	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0010	2532	5	0	2	2	1	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0011	2532	4	4	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0012	2532	4	0	0	1	0	3	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0013	2532	3	0	0	3	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0014	2532	3	1	0	0	1	1	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0015	2532	3	1	1	0	1	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0016	2541	2	2	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0017	2532	2	2	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0018	2532	2	2	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0019	2532	2	2	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0020	2541	1	1	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0021	2541	1	1	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0022	2541	1	1	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0023	2532	1	0	0	1	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0024	2532	1	0	1	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0025	2532	1	1	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0026	2532	1	1	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0027	2532	1	0	0	1	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0028	2532	1	0	0	0	0	1	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0029	2532	1	0	0	0	0	1	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0030	2532	1	0	1	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0031	2532	1	0	0	0	1	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0032	2532	1	0	1	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0033	2532	1	1	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0034	2532	1	0	0	1	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0035	2532	1	0	0	1	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0036	2532	1	1	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0037	2532	1	0	0	1	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0038	2532	1	1	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0039	2532	1	0	1	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0040	2532	1	0	0	0	1	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0041	2532	1	1	0	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1L_chr16_77783564_77985107	0/0	t0042	2532	1	0	0	0	0	1	copy fasta	VAT1L	chr16	77783564	77985107