JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VAT1L_chr16_77783564_77985107	0/0	t0043	2532	1	0	1	0	0	0	copy fasta	VAT1L	chr16	77783564	77985107
VAT1_chr17_43009607_43027385	0/1	t0001	1518	207	24	36	113	6	27	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	1/0	t0002	1518	118	58	23	13	6	17	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	t0003	1518	4	4	0	0	0	0	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	t0004	1518	2	1	1	0	0	0	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	t0005	1518	2	2	0	0	0	0	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	t0006	1518	2	0	0	2	0	0	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	t0007	1518	1	0	1	0	0	0	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	t0008	1518	1	1	0	0	0	0	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	t0009	1518	1	0	0	1	0	0	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	t0010	1518	1	0	1	0	0	0	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	t0011	1518	1	0	0	1	0	0	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	t0012	1518	1	0	0	1	0	0	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	t0013	1518	1	0	0	0	0	1	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	t0014	1518	1	0	0	0	0	1	copy fasta	VAT1	chr17	43009607	43027385
VAT1_chr17_43009607_43027385	0/0	t0015	1518	1	0	0	1	0	0	copy fasta	VAT1	chr17	43009607	43027385
VAV1_chr19_6767708_6862361	1/1	t0001	355	289	83	56	100	9	39	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	t0002	355	9	9	0	0	0	0	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	t0003	355	5	0	2	0	3	0	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	t0004	355	2	0	0	2	0	0	copy fasta	VAV1	chr19	6767708	6862361
VAV1_chr19_6767708_6862361	0/0	t0005	355	1	0	0	0	0	1	copy fasta	VAV1	chr19	6767708	6862361
VAV2_chr9_133756894_133997324	0/1	t0001	2215	65	5	19	25	3	12	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	1/0	t0002	2215	53	23	15	5	2	7	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0003	2215	10	9	1	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0004	2215	9	3	0	1	0	5	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0005	2215	5	4	1	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0006	2215	5	0	1	2	1	1	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0007	2216	4	4	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0008	2215	4	4	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0009	2215	4	4	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0010	2215	3	3	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0011	2215	3	3	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0012	2216	3	3	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0013	2215	3	3	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0014	2215	3	0	2	0	1	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0015	2215	2	1	0	0	1	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0016	2215	2	1	1	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0017	2216	2	2	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0018	2215	2	0	0	2	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0019	2215	1	0	0	0	0	1	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0020	2215	1	0	1	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0021	2215	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0022	2215	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0023	2215	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0024	2215	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0025	2215	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0026	2215	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0027	2215	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0028	2215	1	0	0	1	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0029	2215	1	0	1	0	0	0	copy fasta	VAV2	chr9	133756894	133997324