JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VAV2_chr9_133756894_133997324	0/0	t0030	2215	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0031	2215	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0032	2215	1	0	1	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0033	2215	1	0	0	1	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0034	2215	1	0	1	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0035	2215	1	0	0	1	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV2_chr9_133756894_133997324	0/0	t0036	2215	1	1	0	0	0	0	copy fasta	VAV2	chr9	133756894	133997324
VAV3_chr1_107566161_107970180	0/1	t0001	2479	45	3	15	19	2	5	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0002	2479	36	7	11	13	2	3	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0003	2482	34	20	4	5	2	3	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0004	2482	23	7	6	5	0	5	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0005	2479	13	8	0	0	1	4	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0006	2476	8	2	1	4	0	1	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0007	2482	6	6	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0008	2479	6	0	3	3	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0009	2476	5	3	0	2	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0010	2479	5	0	1	3	0	1	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0011	2479	4	0	0	3	0	1	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0012	2479	3	0	0	3	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	1/0	t0013	2482	3	1	1	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0014	2482	3	2	0	0	0	1	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0015	2482	2	0	1	1	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0016	2482	2	1	1	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0017	2479	2	0	0	0	0	2	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0018	2476	1	1	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0019	2476	1	1	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0020	2479	1	0	0	0	0	1	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0021	2482	1	0	0	0	0	1	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0022	2482	1	1	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0023	2479	1	0	0	1	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0024	2479	1	0	1	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0025	2479	1	0	0	0	1	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0026	2479	1	1	0	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAV3_chr1_107566161_107970180	0/0	t0027	2479	1	0	1	0	0	0	copy fasta	VAV3	chr1	107566161	107970180
VAX1_chr10_117128290_117143270	0/0	t0001	930	112	22	13	65	6	6	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0002	931	89	12	13	52	2	10	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0003	929	77	14	13	47	0	3	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/1	t0004	930	57	11	16	15	6	8	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0005	932	25	7	1	12	1	4	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0006	931	14	1	3	9	0	1	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	1/0	t0007	933	14	4	4	3	0	2	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0008	933	12	1	7	0	1	3	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0009	929	10	1	5	2	0	2	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0010	933	6	5	0	0	0	1	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0011	932	6	0	2	1	1	2	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0012	932	5	4	0	1	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0013	932	4	4	0	0	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0014	932	4	4	0	0	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0015	933	3	0	1	2	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0016	933	2	1	1	0	0	0	copy fasta	VAX1	chr10	117128290	117143270