JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VAX1_chr10_117128290_117143270	0/0	t0017	932	2	0	1	0	0	1	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0018	933	2	0	1	1	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0019	930	1	1	0	0	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0020	931	1	0	0	0	0	1	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0021	932	1	0	0	0	0	1	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0022	932	1	0	0	0	0	1	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0023	931	1	0	0	0	0	1	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0024	931	1	0	1	0	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0025	931	1	1	0	0	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0026	930	1	0	0	0	1	0	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0027	933	1	0	0	1	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0028	932	1	0	0	1	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0029	933	1	0	0	0	0	1	copy fasta	VAX1	chr10	117128290	117143270
VAX1_chr10_117128290_117143270	0/0	t0030	931	1	1	0	0	0	0	copy fasta	VAX1	chr10	117128290	117143270
VAX2_chr2_70895576_70938446	1/1	t0001	289	255	73	42	101	8	29	copy fasta	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	t0002	289	168	22	35	96	2	13	copy fasta	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	t0003	289	1	1	0	0	0	0	copy fasta	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	t0004	289	1	0	0	1	0	0	copy fasta	VAX2	chr2	70895576	70938446
VAX2_chr2_70895576_70938446	0/0	t0005	289	1	0	1	0	0	0	copy fasta	VAX2	chr2	70895576	70938446
VBP1_chrX_155211460_155244841	0/1	t0001	1023	121	4	22	72	3	19	copy fasta	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	1/0	t0002	1023	116	55	22	24	4	10	copy fasta	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	t0003	1023	3	1	1	1	0	0	copy fasta	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	t0004	1023	3	3	0	0	0	0	copy fasta	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	t0005	1023	1	0	0	0	0	1	copy fasta	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	t0006	1023	1	0	0	1	0	0	copy fasta	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	t0007	1023	1	1	0	0	0	0	copy fasta	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	t0008	1023	1	1	0	0	0	0	copy fasta	VBP1	chrX	155211460	155244841
VBP1_chrX_155211460_155244841	0/0	t0009	1024	1	1	0	0	0	0	copy fasta	VBP1	chrX	155211460	155244841
VCAM1_chr1_100714742_100744045	1/1	t0001	882	390	75	75	183	15	40	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	t0002	882	36	6	4	17	1	8	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	t0003	882	7	7	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	t0004	882	5	4	1	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	t0005	882	2	0	0	2	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	t0006	882	2	0	0	2	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	t0007	882	1	1	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	t0008	882	1	1	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	t0009	882	1	1	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAM1_chr1_100714742_100744045	0/0	t0010	882	1	1	0	0	0	0	copy fasta	VCAM1	chr1	100714742	100744045
VCAN_chr5_83466744_83587302	0/0	t0001	2145	84	8	16	44	8	8	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0002	2146	59	6	7	37	4	5	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/1	t0003	2146	40	11	1	19	0	8	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	1/0	t0004	2155	33	14	8	5	3	2	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0005	2156	15	3	1	11	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0006	2147	13	3	0	10	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0007	2147	9	4	1	4	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0008	2151	7	5	2	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0009	2146	7	4	0	1	0	2	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0010	2155	5	0	0	5	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0011	2146	5	0	2	3	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0012	2153	5	3	2	0	0	0	copy fasta	VCAN	chr5	83466744	83587302