JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VCAN_chr5_83466744_83587302	0/0	t0013	2145	5	5	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0014	2154	4	1	3	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0015	2147	4	0	1	2	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0016	2146	4	4	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0017	2145	4	0	4	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0018	2145	4	0	0	4	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0019	2144	4	0	0	3	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0020	2146	3	0	0	3	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0021	2145	3	2	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0022	2145	3	0	0	2	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0023	2154	2	2	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0024	2153	2	2	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0025	2153	2	2	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0026	2145	2	0	0	0	0	2	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0027	2145	2	0	0	0	0	2	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0028	2145	1	0	0	0	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0029	2153	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0030	2146	1	0	0	0	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0031	2155	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0032	2154	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0033	2154	1	0	1	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0034	2154	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0035	2153	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0036	2153	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0037	2153	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0038	2151	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0039	2152	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0040	2147	1	0	0	0	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0041	2147	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0042	2153	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0043	2154	1	0	0	0	1	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0044	2147	1	0	0	0	0	1	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0045	2142	1	1	0	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0046	2155	1	0	0	1	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCAN_chr5_83466744_83587302	0/0	t0047	2155	1	0	1	0	0	0	copy fasta	VCAN	chr5	83466744	83587302
VCL_chr10_73993116_74125169	0/1	t0001	2097	90	16	22	34	6	11	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	1/0	t0002	2093	72	16	15	31	1	8	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0003	2094	29	3	10	12	2	2	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0004	2096	11	6	4	1	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0005	2094	10	10	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0006	2095	7	3	3	1	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0007	2099	7	1	1	4	0	1	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0008	2092	6	1	0	5	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0009	2094	5	0	1	2	0	2	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0010	2093	5	0	2	2	1	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0011	2094	4	3	1	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0012	2099	3	3	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0013	2099	2	2	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0014	2097	2	2	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0015	2093	2	2	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169