JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VCL_chr10_73993116_74125169	0/0	t0016	2097	1	1	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0017	2094	1	1	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0018	2098	1	0	1	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0019	2093	1	1	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0020	2168	1	1	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0021	2095	1	0	0	1	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0022	2093	1	1	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0023	2097	1	0	0	1	0	0	copy fasta	VCL	chr10	73993116	74125169
VCL_chr10_73993116_74125169	0/0	t0024	2097	1	1	0	0	0	0	copy fasta	VCL	chr10	73993116	74125169
VCPIP1_chr8_66623487_66672231	1/0	t0001	6288	150	27	35	47	14	26	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0002	6288	16	4	0	10	0	2	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0003	6288	10	10	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0004	6288	8	0	8	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0005	6288	6	6	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0006	6289	6	0	0	6	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0007	6289	5	1	2	1	0	1	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0008	6288	5	5	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0009	6289	5	0	0	3	0	2	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0010	6288	3	3	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0011	6288	3	3	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0012	6287	3	0	0	1	0	2	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0013	6288	2	0	2	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0014	6288	2	2	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0015	6287	2	2	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0016	6288	2	0	0	0	0	2	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0017	6288	2	2	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0018	6288	2	0	2	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0019	6288	2	2	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0020	6289	1	1	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0021	6287	1	0	0	0	0	1	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0022	6288	1	1	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0023	6288	1	1	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0024	6288	1	1	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0025	6288	1	1	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0026	6288	1	1	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0027	6287	1	1	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0028	6288	1	1	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0029	6289	1	1	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0030	6287	1	0	0	1	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0031	6288	1	0	0	0	0	1	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0032	6288	1	1	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0033	6288	1	0	0	1	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0034	6288	1	0	0	1	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0035	6288	1	0	0	1	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/1	t0036	6288	1	0	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0037	6288	1	0	1	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0038	6288	1	1	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0039	6288	1	0	0	1	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0040	6288	1	0	0	1	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0041	6286	1	0	0	0	0	1	copy fasta	VCPIP1	chr8	66623487	66672231