JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VCPIP1_chr8_66623487_66672231	0/0	t0042	6288	1	1	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPIP1_chr8_66623487_66672231	0/0	t0043	6288	1	1	0	0	0	0	copy fasta	VCPIP1	chr8	66623487	66672231
VCPKMT_chr14_50103637_50121572	0/0	t0001	1083	147	24	22	91	2	8	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0002	1083	114	26	29	48	5	6	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/1	t0003	1083	90	9	18	44	3	15	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	1/0	t0004	1083	41	4	3	15	3	15	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0005	1083	15	15	0	0	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0006	1083	8	5	3	0	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0007	1083	6	0	0	6	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0008	1083	5	5	0	0	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0009	1083	4	0	0	4	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0010	1083	4	2	0	2	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0011	1083	3	0	2	0	1	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0012	1083	3	0	3	0	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0013	1083	2	2	0	0	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0014	1083	2	0	0	2	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0015	1083	1	0	0	1	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0016	1083	1	1	0	0	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0017	1083	1	0	0	0	0	1	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0018	1083	1	0	0	0	0	1	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0019	1083	1	0	0	1	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0020	1083	1	0	0	1	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0021	1083	1	0	0	1	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCPKMT_chr14_50103637_50121572	0/0	t0022	1083	1	1	0	0	0	0	copy fasta	VCPKMT	chr14	50103637	50121572
VCP_chr9_35051064_35077625	1/1	t0001	1326	324	62	50	170	8	32	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	t0002	1326	61	16	15	15	3	12	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	t0003	1327	9	9	0	0	0	0	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	t0004	1332	5	2	0	1	1	1	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	t0005	1338	4	0	4	0	0	0	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	t0006	1326	2	0	2	0	0	0	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	t0007	1326	2	0	2	0	0	0	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	t0008	1326	2	2	0	0	0	0	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	t0009	1326	1	0	1	0	0	0	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	t0010	1326	1	0	0	1	0	0	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	t0011	1326	1	0	0	1	0	0	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	t0012	1332	1	0	0	0	0	1	copy fasta	VCP	chr9	35051064	35077625
VCP_chr9_35051064_35077625	0/0	t0013	1344	1	1	0	0	0	0	copy fasta	VCP	chr9	35051064	35077625
VCX2_chrX_8164944_8176267	0/0	t0001	396	72	23	9	30	2	8	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	t0002	396	14	5	0	4	2	3	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	1/0	t0003	396	12	2	6	1	1	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	t0004	396	3	0	2	0	0	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	t0005	396	3	3	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	t0006	396	2	2	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	t0007	396	1	1	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	t0008	395	1	0	0	0	0	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	t0009	396	1	0	0	0	0	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	t0010	396	1	1	0	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	t0011	396	1	0	0	0	0	1	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	t0012	396	1	0	1	0	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	t0013	397	1	0	0	1	0	0	copy fasta	VCX2	chrX	8164944	8176267