JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VCX2_chrX_8164944_8176267	0/0	t0014	397	1	0	0	1	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX2_chrX_8164944_8176267	0/0	t0015	396	1	0	0	1	0	0	copy fasta	VCX2	chrX	8164944	8176267
VCX3A_chrX_6528618_6540118	0/0	t0001	435	20	19	1	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	t0002	435	17	1	1	10	2	3	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	t0003	435	12	11	1	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	t0004	435	11	8	2	0	0	1	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	t0005	435	2	1	0	0	1	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/1	t0006	435	2	0	0	1	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	t0007	435	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	t0008	435	1	0	0	0	0	1	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	t0009	435	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	t0010	435	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	1/0	t0011	435	1	0	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	t0012	435	1	0	1	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	t0013	435	1	0	0	0	0	1	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	t0014	435	1	0	0	1	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	t0015	435	1	0	0	1	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3A_chrX_6528618_6540118	0/0	t0016	435	1	1	0	0	0	0	copy fasta	VCX3A	chrX	6528618	6540118
VCX3B_chrX_8459830_8471510	0/0	t0001	435	53	6	5	33	1	8	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/1	t0002	435	51	2	19	12	5	12	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0003	435	51	16	4	30	0	1	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0004	435	33	0	18	12	1	2	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0005	435	11	0	0	8	0	3	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0006	435	9	7	2	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0007	435	7	5	2	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0008	435	7	4	1	2	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0009	435	5	5	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0010	435	4	0	2	0	2	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0011	435	3	3	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0012	435	3	0	3	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0013	435	3	0	0	3	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0014	435	3	3	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0015	435	2	0	0	2	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0016	435	2	0	2	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0017	434	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0018	435	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0019	437	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0020	435	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0021	435	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0022	435	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0023	435	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0024	435	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0025	436	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0026	434	1	0	1	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0027	435	1	1	0	0	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0028	435	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0029	435	1	0	0	0	0	1	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0030	435	1	0	0	0	0	1	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0031	433	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510
VCX3B_chrX_8459830_8471510	0/0	t0032	435	1	0	0	1	0	0	copy fasta	VCX3B	chrX	8459830	8471510