JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VDAC2_chr10_75205796_75236448	0/0	t0006	628	3	3	0	0	0	0	copy fasta	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	t0007	628	2	0	0	0	0	2	copy fasta	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	t0008	628	1	1	0	0	0	0	copy fasta	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	t0009	628	1	0	1	0	0	0	copy fasta	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	t0010	628	1	1	0	0	0	0	copy fasta	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	t0011	628	1	0	0	1	0	0	copy fasta	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	t0012	628	1	1	0	0	0	0	copy fasta	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	t0013	628	1	0	1	0	0	0	copy fasta	VDAC2	chr10	75205796	75236448
VDAC2_chr10_75205796_75236448	0/0	t0014	628	1	0	0	1	0	0	copy fasta	VDAC2	chr10	75205796	75236448
VDAC3_chr8_42386880_42410937	1/1	t0001	567	156	26	20	81	2	25	copy fasta	VDAC3	chr8	42386880	42410937
VDAC3_chr8_42386880_42410937	0/0	t0002	567	129	67	2	53	0	7	copy fasta	VDAC3	chr8	42386880	42410937
VDAC3_chr8_42386880_42410937	0/0	t0003	567	1	0	0	1	0	0	copy fasta	VDAC3	chr8	42386880	42410937
VDAC3_chr8_42386880_42410937	0/0	t0004	567	1	0	0	1	0	0	copy fasta	VDAC3	chr8	42386880	42410937
VDAC3_chr8_42386880_42410937	0/0	t0005	567	1	1	0	0	0	0	copy fasta	VDAC3	chr8	42386880	42410937
VDR_chr12_47836537_47909994	0/0	t0001	3334	72	7	12	38	3	12	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0002	3326	51	14	15	8	6	8	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/1	t0003	3333	35	0	18	16	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0004	3333	27	5	5	11	0	6	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0005	3333	19	0	2	16	0	1	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0006	3335	19	0	2	16	0	1	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0007	3334	10	2	1	1	0	6	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0008	3334	8	4	1	3	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0009	3332	7	1	4	1	0	1	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0010	3329	6	6	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0011	3333	5	5	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0012	3332	5	0	2	0	1	2	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0013	3332	5	0	1	4	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0014	3332	5	5	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0015	3340	4	1	1	0	2	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0016	3326	3	3	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0017	3326	3	0	0	3	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0018	3333	3	0	0	3	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	1/0	t0019	3333	3	0	1	0	0	1	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0020	3333	3	3	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0021	3333	3	3	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0022	3339	3	0	3	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0023	3331	2	2	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0024	3336	2	2	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0025	3336	2	1	1	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0026	3332	2	0	0	2	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0027	3337	2	2	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0028	3334	2	2	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0029	3333	2	2	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0030	3332	2	2	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0031	3335	1	0	0	1	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0032	3332	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0033	3334	1	0	1	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0034	3332	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0035	3326	1	0	1	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0036	3326	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994