JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VDR_chr12_47836537_47909994	0/0	t0037	3335	1	0	0	0	0	1	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0038	3335	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0039	3333	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0040	3332	1	0	0	1	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0041	3335	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0042	3337	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0043	3337	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0044	3331	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0045	3334	1	0	0	1	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0046	3333	1	0	1	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0047	3332	1	0	0	1	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0048	3331	1	0	0	1	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0049	3326	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0050	3334	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0051	3332	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0052	3334	1	0	0	0	0	1	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0053	3334	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0054	3336	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0055	3335	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0056	3333	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0057	3332	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0058	3334	1	0	1	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0059	3337	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0060	3336	1	0	0	1	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0061	3335	1	0	0	0	1	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0062	3335	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0063	3335	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0064	3335	1	0	0	1	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0065	3335	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0066	3334	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0067	3333	1	0	1	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0068	3333	1	0	0	0	0	1	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0069	3334	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0070	3332	1	0	0	1	0	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0071	3341	1	0	0	0	1	0	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0072	3338	1	0	0	0	0	1	copy fasta	VDR	chr12	47836537	47909994
VDR_chr12_47836537_47909994	0/0	t0073	3340	1	1	0	0	0	0	copy fasta	VDR	chr12	47836537	47909994
VEGFA_chr6_43765211_43791487	0/1	t0001	2422	142	27	31	74	3	6	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0002	2422	75	10	18	37	3	7	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0003	2422	49	11	8	10	6	14	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0004	2422	31	5	7	14	2	3	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0005	2422	25	1	6	13	2	3	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0006	2422	23	3	7	12	0	1	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	1/0	t0007	2422	22	8	4	7	1	1	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0008	2422	9	0	0	9	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0009	2422	4	0	0	3	0	1	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0010	2422	4	4	0	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0011	2421	3	0	0	3	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0012	2421	3	0	1	2	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0013	2422	3	3	0	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487