JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VEGFA_chr6_43765211_43791487	0/0	t0014	2422	3	0	1	0	0	2	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0015	2421	3	3	0	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0016	2422	3	0	0	3	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0017	2422	3	3	0	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0018	2422	2	0	1	0	1	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0019	2422	2	0	0	0	0	2	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0020	2421	2	2	0	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0021	2422	2	2	0	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0022	2422	2	1	1	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0023	2422	2	2	0	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0024	2422	2	0	0	0	0	2	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0025	2424	2	2	0	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0026	2422	1	0	0	1	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0027	2422	1	0	0	1	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0028	2422	1	0	0	1	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0029	2422	1	1	0	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0030	2422	1	0	0	1	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0031	2421	1	0	1	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0032	2422	1	0	0	1	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0033	2422	1	0	0	1	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0034	2422	1	0	0	1	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0035	2422	1	0	0	1	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0036	2422	1	1	0	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0037	2424	1	1	0	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0038	2421	1	1	0	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0039	2422	1	0	0	0	0	1	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0040	2424	1	0	0	0	0	1	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0041	2422	1	1	0	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0042	2422	1	0	0	0	0	1	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0043	2422	1	1	0	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0044	2422	1	0	0	1	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0045	2421	1	0	0	1	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0046	2422	1	0	0	1	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0047	2422	1	1	0	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0048	2422	1	1	0	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0049	2422	1	0	0	0	0	1	copy fasta	VEGFA	chr6	43765211	43791487
VEGFA_chr6_43765211_43791487	0/0	t0050	2422	1	1	0	0	0	0	copy fasta	VEGFA	chr6	43765211	43791487
VEGFB_chr11_64229584_64244264	0/1	t0001	1182	197	39	37	86	4	30	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	t0002	1182	57	8	27	19	1	2	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	t0003	1182	46	23	5	15	1	2	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	t0004	1182	13	13	0	0	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	t0005	1182	4	4	0	0	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	t0006	1182	3	2	1	0	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	t0007	1182	2	0	0	2	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	t0008	1182	1	0	0	0	0	1	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	t0009	1182	1	1	0	0	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	t0010	1182	1	1	0	0	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	t0011	1182	1	1	0	0	0	0	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	0/0	t0012	1182	1	0	0	0	0	1	copy fasta	VEGFB	chr11	64229584	64244264
VEGFB_chr11_64229584_64244264	1/0	t0013	1182	1	0	0	0	0	0	copy fasta	VEGFB	chr11	64229584	64244264