JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VEGFC_chr4_176678538_176797922	1/1	t0001	1000	166	55	36	42	8	23	copy fasta	VEGFC	chr4	176678538	176797922
VEGFC_chr4_176678538_176797922	0/0	t0002	1008	34	18	9	4	0	3	copy fasta	VEGFC	chr4	176678538	176797922
VEGFC_chr4_176678538_176797922	0/0	t0003	1000	9	5	3	0	0	1	copy fasta	VEGFC	chr4	176678538	176797922
VEGFC_chr4_176678538_176797922	0/0	t0004	1000	4	4	0	0	0	0	copy fasta	VEGFC	chr4	176678538	176797922
VEGFC_chr4_176678538_176797922	0/0	t0005	1000	2	2	0	0	0	0	copy fasta	VEGFC	chr4	176678538	176797922
VEGFC_chr4_176678538_176797922	0/0	t0006	1000	2	2	0	0	0	0	copy fasta	VEGFC	chr4	176678538	176797922
VEGFC_chr4_176678538_176797922	0/0	t0007	999	2	2	0	0	0	0	copy fasta	VEGFC	chr4	176678538	176797922
VEGFC_chr4_176678538_176797922	0/0	t0008	1000	2	2	0	0	0	0	copy fasta	VEGFC	chr4	176678538	176797922
VEGFC_chr4_176678538_176797922	0/0	t0009	1008	1	0	0	0	0	1	copy fasta	VEGFC	chr4	176678538	176797922
VEGFC_chr4_176678538_176797922	0/0	t0010	1000	1	1	0	0	0	0	copy fasta	VEGFC	chr4	176678538	176797922
VEGFC_chr4_176678538_176797922	0/0	t0011	1037	1	1	0	0	0	0	copy fasta	VEGFC	chr4	176678538	176797922
VEGFD_chrX_15340596_15389413	1/1	t0001	1005	197	45	52	70	10	18	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	t0002	1011	86	26	2	44	1	13	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	t0003	1011	5	0	1	3	0	1	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	t0004	1010	5	3	1	1	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	t0005	1011	2	2	0	0	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	t0006	1011	2	1	1	0	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	t0007	1006	1	0	0	1	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	t0008	1006	1	0	0	1	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	t0009	1011	1	1	0	0	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	t0010	1012	1	0	0	1	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VEGFD_chrX_15340596_15389413	0/0	t0011	1009	1	0	0	1	0	0	copy fasta	VEGFD	chrX	15340596	15389413
VENTX_chr10_133232855_133246928	0/1	t0001	1684	165	7	30	103	7	17	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0002	1683	32	1	9	9	6	7	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0003	1684	28	2	10	11	1	4	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0004	1683	19	4	6	7	0	2	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0005	1691	18	2	7	6	0	3	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0006	1684	18	11	2	3	0	2	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0007	1684	12	4	1	2	0	5	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0008	1684	11	7	3	0	1	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0009	1690	6	1	1	1	1	2	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0010	1683	6	4	1	0	0	1	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0011	1683	5	5	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0012	1691	5	0	0	5	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0013	1686	5	0	2	3	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0014	1685	5	0	1	4	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0015	1686	5	5	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0016	1683	4	4	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0017	1692	4	0	1	0	0	3	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0018	1685	4	3	1	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0019	1683	3	1	2	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0020	1691	3	1	0	2	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0021	1716	3	3	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0022	1685	3	0	0	3	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0023	1682	3	1	0	2	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0024	1684	3	2	1	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0025	1683	3	0	0	3	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0026	1684	2	2	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0027	1697	2	2	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0028	1691	2	0	2	0	0	0	copy fasta	VENTX	chr10	133232855	133246928