JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VENTX_chr10_133232855_133246928	0/0	t0029	1682	2	1	1	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0030	1684	2	0	0	2	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0031	1685	2	0	0	2	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0032	1683	2	2	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0033	1683	2	2	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0034	1686	2	2	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0035	1693	2	2	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0036	1682	2	1	0	0	0	1	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0037	1684	2	2	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0038	1684	1	0	0	0	0	1	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0039	1685	1	0	0	1	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0040	1684	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0041	1683	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0042	1688	1	0	1	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0043	1695	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0044	1683	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0045	1695	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0046	1690	1	0	0	1	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0047	1691	1	0	0	1	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0048	1692	1	0	0	0	0	1	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0049	1693	1	0	0	0	0	1	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0050	1686	1	0	0	1	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0051	1684	1	0	1	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0052	1685	1	0	0	1	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0053	1683	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0054	1684	1	0	0	1	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0055	1684	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0056	1686	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0057	1683	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0058	1682	1	0	1	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	1/0	t0059	1683	1	0	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0060	1683	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0061	1688	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0062	1684	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0063	1684	1	0	0	1	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0064	1683	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0065	1683	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0066	1697	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0067	1697	1	1	0	0	0	0	copy fasta	VENTX	chr10	133232855	133246928
VENTX_chr10_133232855_133246928	0/0	t0068	1684	1	0	0	1	0	0	copy fasta	VENTX	chr10	133232855	133246928
VEPH1_chr3_157254742_157508416	1/0	t0001	1690	131	36	18	56	6	14	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	t0002	1686	117	15	23	64	6	9	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	t0003	1685	14	13	1	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	t0004	1690	11	9	2	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	t0005	1687	7	0	0	7	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	t0006	1690	5	0	0	5	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	t0007	1690	4	0	0	0	0	4	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	t0008	1690	4	4	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	t0009	1690	2	0	0	2	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	t0010	1686	2	2	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416