JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VEPH1_chr3_157254742_157508416	0/1	t0011	1691	1	0	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	t0012	1690	1	0	0	0	0	1	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	t0013	1690	1	0	0	1	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	t0014	1690	1	0	0	1	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	t0015	1685	1	1	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	t0016	1686	1	1	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEPH1_chr3_157254742_157508416	0/0	t0017	1685	1	1	0	0	0	0	copy fasta	VEPH1	chr3	157254742	157508416
VEZF1_chr17_57966552_57993254	1/1	t0001	3065	218	69	24	80	13	30	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0002	3067	19	6	8	0	2	3	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0003	3064	12	4	5	3	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0004	3065	4	4	0	0	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0005	3066	3	1	1	0	0	1	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0006	3066	3	3	0	0	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0007	3065	2	2	0	0	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0008	3065	1	0	0	1	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0009	3065	1	0	0	1	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0010	3065	1	0	0	0	1	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0011	3065	1	1	0	0	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0012	3065	1	0	0	1	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0013	3065	1	0	0	0	0	1	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0014	3065	1	0	0	1	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0015	3065	1	0	0	1	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0016	3065	1	1	0	0	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0017	3065	1	1	0	0	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0018	3065	1	0	0	1	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0019	3065	1	0	0	0	0	1	copy fasta	VEZF1	chr17	57966552	57993254
VEZF1_chr17_57966552_57993254	0/0	t0020	3064	1	0	0	1	0	0	copy fasta	VEZF1	chr17	57966552	57993254
VEZT_chr12_95212807_95307799	1/1	t0001	2171	214	36	43	105	7	21	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	t0002	2171	66	12	11	36	1	6	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	t0003	2171	50	29	8	1	2	10	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	t0004	2171	43	0	0	43	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	t0005	2171	16	5	5	0	1	5	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	t0006	2171	14	1	7	2	3	1	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	t0007	2167	7	0	0	7	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	t0008	2171	5	0	0	5	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	t0009	2171	4	0	4	0	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	t0010	2171	2	0	0	2	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	t0011	2171	2	0	0	2	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	t0012	2171	1	0	0	0	0	1	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	t0013	2129	1	0	0	1	0	0	copy fasta	VEZT	chr12	95212807	95307799
VEZT_chr12_95212807_95307799	0/0	t0014	2171	1	1	0	0	0	0	copy fasta	VEZT	chr12	95212807	95307799
VGF_chr7_101157509_101170569	1/1	t0001	704	414	87	70	191	18	46	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	t0002	704	5	5	0	0	0	0	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	t0003	704	1	0	0	1	0	0	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	t0004	704	1	0	0	1	0	0	copy fasta	VGF	chr7	101157509	101170569
VGF_chr7_101157509_101170569	0/0	t0005	704	1	0	0	1	0	0	copy fasta	VGF	chr7	101157509	101170569
VGLL1_chrX_136527215_136561799	1/1	t0001	368	253	60	47	109	5	30	copy fasta	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	t0002	368	3	0	0	2	0	1	copy fasta	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	t0003	368	1	0	0	1	0	0	copy fasta	VGLL1	chrX	136527215	136561799
VGLL1_chrX_136527215_136561799	0/0	t0004	367	1	0	0	1	0	0	copy fasta	VGLL1	chrX	136527215	136561799