JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VGLL1_chrX_136527215_136561799	0/0	t0005	368	1	0	0	0	0	1	copy fasta	VGLL1	chrX	136527215	136561799
VGLL2_chr6_117260558_117278565	1/0	t0001	1278	376	89	66	167	15	38	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/1	t0002	1278	37	1	6	21	3	5	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	t0003	1279	5	0	0	5	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	t0004	1278	4	4	0	0	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	t0005	1278	2	2	0	0	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	t0006	1279	2	0	0	2	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	t0007	1278	1	1	0	0	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	t0008	1278	1	0	0	1	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	t0009	1278	1	0	1	0	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	t0010	1278	1	0	1	0	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	t0011	1290	1	0	0	0	0	1	copy fasta	VGLL2	chr6	117260558	117278565
VGLL2_chr6_117260558_117278565	0/0	t0012	1278	1	1	0	0	0	0	copy fasta	VGLL2	chr6	117260558	117278565
VGLL3_chr3_86932973_86996149	1/0	t0001	9458	111	11	28	52	4	15	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0002	9458	79	19	12	38	3	7	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0003	9458	26	16	4	6	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0004	9463	24	5	0	19	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0005	9463	13	0	0	13	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0006	9460	10	0	1	9	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0007	9458	10	0	0	10	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0008	9458	8	0	1	7	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0009	9463	7	6	1	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0010	9458	7	0	4	0	1	2	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0011	9457	6	6	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0012	9458	6	0	0	6	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0013	9457	5	0	0	5	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0014	9464	4	0	0	1	1	2	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/1	t0015	9458	3	0	0	0	2	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0016	9458	3	3	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0017	9457	2	2	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0018	9459	2	2	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0019	9458	2	0	0	2	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0020	9458	2	2	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0021	9458	2	0	0	2	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0022	9463	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0023	9458	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0024	9458	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0025	9458	1	0	0	0	0	1	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0026	9463	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0027	9463	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0028	9463	1	0	0	1	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0029	9463	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0030	9458	1	0	0	0	0	1	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0031	9458	1	0	0	0	0	1	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0032	9458	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0033	9458	1	0	0	0	0	1	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0034	9458	1	0	0	1	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0035	9458	1	0	0	1	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0036	9458	1	0	0	0	0	1	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0037	9458	1	0	1	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149