JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VGLL3_chr3_86932973_86996149	0/0	t0038	9458	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0039	9459	1	0	0	1	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0040	9458	1	0	0	1	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0041	9458	1	0	1	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0042	9458	1	0	0	0	1	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0043	9458	1	0	0	0	0	1	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0044	9458	1	0	0	1	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0045	9458	1	0	1	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0046	9460	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0047	9460	1	0	1	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0048	9458	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0049	9458	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0050	9458	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0051	9458	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0052	9458	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0053	9458	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0054	9458	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0055	9458	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0056	9458	1	0	0	1	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0057	9457	1	1	0	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0058	9463	1	0	0	1	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL3_chr3_86932973_86996149	0/0	t0059	9458	1	0	1	0	0	0	copy fasta	VGLL3	chr3	86932973	86996149
VGLL4_chr3_11551069_11648915	1/0	t0001	2885	155	18	33	68	9	26	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/1	t0002	2886	124	16	22	69	4	12	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0003	2887	21	2	1	17	0	1	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0004	2882	13	11	2	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0005	2886	9	2	0	6	0	1	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0006	2881	7	7	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0007	2885	7	3	4	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0008	2883	5	5	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0009	2881	5	5	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0010	2881	3	1	1	0	1	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0011	2883	3	2	1	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0012	2879	2	2	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0013	2882	2	2	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0014	2886	2	0	1	0	0	1	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0015	2884	2	2	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0016	2884	2	2	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0017	2883	2	1	1	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0018	2887	2	0	0	2	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0019	2882	2	1	1	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0020	2885	1	1	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0021	2885	1	0	1	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0022	2881	1	1	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0023	2885	1	0	0	0	0	1	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0024	2885	1	0	0	1	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0025	2885	1	1	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0026	2885	1	1	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0027	2886	1	0	0	1	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0028	2880	1	1	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915