JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VGLL4_chr3_11551069_11648915	0/0	t0029	2882	1	1	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0030	2886	1	0	0	1	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0031	2886	1	1	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0032	2888	1	1	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0033	2886	1	0	0	0	0	1	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0034	2886	1	1	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0035	2886	1	0	0	0	0	1	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0036	2896	1	0	0	1	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0037	2870	1	1	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0038	2881	1	1	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VGLL4_chr3_11551069_11648915	0/0	t0039	2882	1	1	0	0	0	0	copy fasta	VGLL4	chr3	11551069	11648915
VHLL_chr1_156293624_156304307	1/1	t0001	265	385	84	70	176	16	37	copy fasta	VHLL	chr1	156293624	156304307
VHLL_chr1_156293624_156304307	0/0	t0002	265	1	0	0	0	0	1	copy fasta	VHLL	chr1	156293624	156304307
VHLL_chr1_156293624_156304307	0/0	t0003	265	1	0	0	1	0	0	copy fasta	VHLL	chr1	156293624	156304307
VHLL_chr1_156293624_156304307	0/0	t0004	265	1	0	0	1	0	0	copy fasta	VHLL	chr1	156293624	156304307
VHL_chr3_10136778_10158667	0/1	t0001	3767	144	8	24	90	6	15	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0002	3772	39	0	6	26	0	7	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0003	3760	27	25	1	0	0	1	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0004	3771	22	6	7	4	1	4	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0005	3768	18	2	0	15	0	1	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0006	3767	15	0	13	1	0	1	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0007	3772	9	0	3	4	1	1	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0008	3768	8	1	1	5	0	1	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0009	3769	8	8	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0010	3766	7	3	2	1	0	1	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0011	3771	6	1	1	3	0	1	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0012	3772	5	0	0	3	0	2	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0013	3773	5	0	1	2	0	2	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0014	3771	5	0	1	1	2	1	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0015	3766	4	4	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0016	3770	4	4	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0017	3764	4	4	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0018	3761	4	4	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0019	3768	3	0	0	1	2	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0020	3766	3	0	0	3	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0021	3771	3	3	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0022	3772	3	2	1	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0023	3767	2	2	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0024	3771	2	0	0	0	0	2	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0025	3769	2	2	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0026	3770	2	2	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0027	3772	2	0	1	1	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0028	3771	2	2	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0029	3771	2	0	2	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0030	3773	2	0	2	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0031	3771	2	0	1	1	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0032	3773	2	0	0	2	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0033	3774	2	0	1	0	0	1	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0034	3771	2	0	0	1	0	1	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0035	3768	1	0	0	0	0	1	copy fasta	VHL	chr3	10136778	10158667