JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VHL_chr3_10136778_10158667	0/0	t0036	3770	1	0	0	1	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0037	3767	1	0	0	1	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0038	3767	1	0	0	0	1	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0039	3768	1	0	1	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0040	3769	1	0	0	0	0	1	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0041	3765	1	0	1	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0042	3768	1	0	1	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0043	3767	1	0	0	1	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0044	3768	1	0	1	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0045	3760	1	1	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0046	3773	1	0	0	0	0	1	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0047	3770	1	0	1	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0048	3774	1	1	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0049	3771	1	1	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0050	3770	1	1	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0051	3769	1	1	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0052	3768	1	1	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0053	3772	1	1	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0054	3760	1	1	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0055	3774	1	0	0	1	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0056	3770	1	0	0	0	0	1	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0057	3772	1	1	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0058	3772	1	1	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0059	3772	1	0	1	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0060	3769	1	0	0	1	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0061	3765	1	0	1	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0062	3760	1	1	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0063	3772	1	1	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0064	3771	1	0	0	0	1	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0065	3775	1	0	1	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	1/0	t0066	3773	1	0	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0067	3773	1	0	0	1	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0068	3775	1	0	1	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0069	3773	1	0	0	1	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0070	3772	1	1	0	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0071	3773	1	0	1	0	0	0	copy fasta	VHL	chr3	10136778	10158667
VHL_chr3_10136778_10158667	0/0	t0072	3772	1	0	0	1	0	0	copy fasta	VHL	chr3	10136778	10158667
VIL1_chr2_218414123_218458295	0/1	t0001	4025	131	4	26	69	6	25	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0002	4025	63	34	1	24	0	4	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0003	4025	59	11	14	20	4	10	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0004	4025	18	0	8	0	6	4	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0005	4025	17	15	2	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0006	4022	10	10	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0007	4025	10	0	0	10	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	1/0	t0008	4017	6	5	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0009	4025	3	3	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0010	4024	3	3	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0011	4022	2	2	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0012	4024	2	2	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0013	4025	1	0	0	1	0	0	copy fasta	VIL1	chr2	218414123	218458295