JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VIL1_chr2_218414123_218458295	0/0	t0014	4025	1	0	0	0	0	1	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0015	4025	1	0	0	1	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0016	4025	1	0	0	1	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0017	4025	1	1	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0018	4025	1	0	0	0	0	1	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0019	4025	1	1	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0020	4017	1	0	1	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0021	4025	1	0	0	1	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0022	4025	1	0	0	1	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0023	4025	1	1	0	0	0	0	copy fasta	VIL1	chr2	218414123	218458295
VIL1_chr2_218414123_218458295	0/0	t0024	4025	1	0	0	0	0	1	copy fasta	VIL1	chr2	218414123	218458295
VILL_chr3_37985786_38012185	1/1	t0001	261	324	78	64	130	10	40	copy fasta	VILL	chr3	37985786	38012185
VIM_chr10_17223241_17242593	1/1	t0001	754	198	19	40	97	8	32	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	t0002	754	116	40	15	54	4	3	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	t0003	754	39	6	17	8	3	5	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	t0004	754	15	13	0	0	1	1	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	t0005	754	13	9	3	0	0	1	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	t0006	755	6	5	1	0	0	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	t0007	754	6	0	4	0	2	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	t0008	754	6	1	5	0	0	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	t0009	754	2	2	0	0	0	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	t0010	754	1	1	0	0	0	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	t0011	754	1	1	0	0	0	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	t0012	754	1	0	0	1	0	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	t0013	754	1	1	0	0	0	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	t0014	754	1	0	0	1	0	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	t0015	754	1	0	0	1	0	0	copy fasta	VIM	chr10	17223241	17242593
VIM_chr10_17223241_17242593	0/0	t0016	754	1	0	1	0	0	0	copy fasta	VIM	chr10	17223241	17242593
VIPAS39_chr14_77421675_77462601	0/0	t0001	1049	147	65	31	14	11	26	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/1	t0002	1049	84	16	22	33	2	10	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	1/0	t0003	1049	8	7	0	0	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	t0004	1049	1	0	0	0	1	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	t0005	1049	1	1	0	0	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	t0006	1049	1	1	0	0	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	t0007	1049	1	0	1	0	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPAS39_chr14_77421675_77462601	0/0	t0008	1049	1	0	0	1	0	0	copy fasta	VIPAS39	chr14	77421675	77462601
VIPR1_chr3_42497643_42542568	0/0	t0001	1381	110	39	16	44	2	9	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0002	1381	94	16	14	44	10	10	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	1/0	t0003	1381	55	6	20	20	2	6	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/1	t0004	1381	34	1	7	22	0	3	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0005	1381	21	2	0	18	0	1	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0006	1381	18	15	2	0	0	1	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0007	1381	17	0	2	15	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0008	1381	14	4	3	2	2	3	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0009	1381	5	0	0	5	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0010	1381	5	5	0	0	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0011	1381	4	0	0	1	0	3	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0012	1381	4	4	0	0	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0013	1381	4	2	2	0	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0014	1381	3	1	0	0	1	1	copy fasta	VIPR1	chr3	42497643	42542568