JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VIPR1_chr3_42497643_42542568	0/0	t0015	1381	2	0	1	1	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0016	1381	2	0	0	1	1	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0017	1381	2	0	0	1	0	1	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0018	1381	2	1	0	0	0	1	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0019	1381	1	0	0	1	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0020	1381	1	1	0	0	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0021	1381	1	0	0	1	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0022	1381	1	0	0	0	0	1	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0023	1381	1	0	0	1	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0024	1381	1	1	0	0	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0025	1381	1	0	0	1	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0026	1381	1	0	0	1	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0027	1381	1	0	0	0	0	1	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0028	1381	1	0	0	1	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0029	1381	1	1	0	0	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0030	1381	1	0	0	0	0	1	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0031	1381	1	0	0	1	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0032	1381	1	0	1	0	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0033	1381	1	0	0	1	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR1_chr3_42497643_42542568	0/0	t0034	1381	1	1	0	0	0	0	copy fasta	VIPR1	chr3	42497643	42542568
VIPR2_chr7_159023175_159149867	0/0	t0001	2536	63	1	25	23	3	11	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0002	2538	52	3	13	28	1	7	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0003	2538	37	5	3	29	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0004	2538	33	12	9	8	1	3	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0005	2537	16	0	6	10	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	1/0	t0006	2538	15	8	3	0	0	3	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0007	2538	13	10	0	3	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0008	2539	11	10	1	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0009	2539	8	1	2	3	0	2	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0010	2536	7	0	0	7	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0011	2539	6	4	0	1	0	1	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0012	2539	5	5	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0013	2539	4	4	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/1	t0014	2536	4	0	2	0	0	1	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0015	2540	4	4	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0016	2534	3	3	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0017	2538	3	0	0	3	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0018	2540	3	3	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0019	2540	3	2	1	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0020	2537	2	0	0	2	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0021	2537	2	0	0	1	0	1	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0022	2540	2	2	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0023	2538	2	2	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0024	2538	2	0	0	2	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0025	2538	2	0	1	0	1	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0026	2539	2	0	0	2	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0027	2537	1	0	0	1	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0028	2539	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0029	2536	1	0	1	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0030	2536	1	0	0	0	0	1	copy fasta	VIPR2	chr7	159023175	159149867