JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VIPR2_chr7_159023175_159149867	0/0	t0031	2537	1	0	1	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0032	2537	1	0	1	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0033	2537	1	0	0	1	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0034	2537	1	0	0	0	0	1	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0035	2540	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0036	2537	1	0	0	1	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0037	2538	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0038	2538	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0039	2538	1	0	0	1	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0040	2538	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0041	2538	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0042	2538	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0043	2538	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0044	2538	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0045	2538	1	0	0	1	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0046	2538	1	0	0	0	0	1	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0047	2540	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0048	2539	1	0	0	1	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0049	2539	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0050	2540	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0051	2538	1	0	0	1	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0052	2538	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0053	2538	1	0	0	1	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0054	2538	1	0	0	1	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0055	2539	1	0	0	1	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0056	2540	1	0	1	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0057	2537	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIPR2_chr7_159023175_159149867	0/0	t0058	2538	1	1	0	0	0	0	copy fasta	VIPR2	chr7	159023175	159149867
VIP_chr6_152745797_152764760	1/0	t0001	1068	283	34	56	154	10	28	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/1	t0002	1068	124	43	20	38	8	14	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	t0003	1068	8	7	1	0	0	0	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	t0004	1070	6	4	2	0	0	0	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	t0005	1070	5	5	0	0	0	0	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	t0006	1068	1	0	0	0	0	1	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	t0007	1068	1	0	0	0	0	1	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	t0008	1068	1	1	0	0	0	0	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	t0009	1068	1	0	1	0	0	0	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	t0010	1068	1	1	0	0	0	0	copy fasta	VIP	chr6	152745797	152764760
VIP_chr6_152745797_152764760	0/0	t0011	1070	1	1	0	0	0	0	copy fasta	VIP	chr6	152745797	152764760
VIRMA_chr8_94482689_94558469	1/1	t0001	1040	312	61	59	137	12	41	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	t0002	1040	11	3	3	0	4	1	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	t0003	1038	11	10	1	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	t0004	1040	4	3	1	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	t0005	1040	2	2	0	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	t0006	1040	2	0	0	0	0	2	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	t0007	1040	1	1	0	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	t0008	1040	1	0	1	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	t0009	1038	1	0	1	0	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIRMA_chr8_94482689_94558469	0/0	t0010	1040	1	0	0	1	0	0	copy fasta	VIRMA	chr8	94482689	94558469
VIT_chr2_36691707_36819794	0/1	t0001	719	221	37	38	108	8	29	copy fasta	VIT	chr2	36691707	36819794