JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VIT_chr2_36691707_36819794	0/0	t0002	719	54	24	14	5	2	9	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	t0003	719	36	19	5	7	0	5	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	1/0	t0004	719	10	6	2	0	0	1	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	t0005	719	3	0	0	3	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	t0006	719	1	0	1	0	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	t0007	719	1	1	0	0	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	t0008	719	1	1	0	0	0	0	copy fasta	VIT	chr2	36691707	36819794
VIT_chr2_36691707_36819794	0/0	t0009	719	1	0	0	1	0	0	copy fasta	VIT	chr2	36691707	36819794
VKORC1L1_chr7_65868074_65964558	1/0	t0001	5557	80	21	24	17	6	11	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/1	t0002	5555	59	11	11	27	3	6	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0003	5560	53	2	16	24	1	10	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0004	5555	32	4	2	22	1	3	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0005	5560	23	0	2	21	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0006	5546	19	0	4	13	2	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0007	5557	12	11	1	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0008	5555	7	0	0	7	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0009	5555	7	0	4	1	0	2	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0010	5559	7	6	1	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0011	5557	5	0	0	5	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0012	5558	4	4	0	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0013	5559	3	3	0	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0014	5560	3	0	0	3	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0015	5557	2	0	0	2	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0016	5560	2	2	0	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0017	5546	2	0	0	2	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0018	5555	2	0	0	2	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0019	5534	2	0	0	2	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0020	5555	2	2	0	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0021	5557	1	1	0	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0022	5560	1	1	0	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0023	5560	1	1	0	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0024	5578	1	0	0	1	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0025	5555	1	0	0	1	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0026	5546	1	0	1	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0027	5545	1	0	0	1	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0028	5560	1	0	0	1	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0029	5560	1	1	0	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0030	5560	1	1	0	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0031	5555	1	0	1	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0032	5555	1	0	0	0	0	1	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0033	5555	1	0	0	1	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0034	5555	1	0	0	0	1	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0035	5556	1	1	0	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0036	5557	1	0	0	0	0	1	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0037	5557	1	0	1	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0038	5557	1	1	0	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0039	5557	1	1	0	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0040	5557	1	0	1	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0041	5557	1	0	1	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0042	5557	1	1	0	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558