JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VKORC1L1_chr7_65868074_65964558	0/0	t0043	5555	1	1	0	0	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1L1_chr7_65868074_65964558	0/0	t0044	5557	1	0	0	1	0	0	copy fasta	VKORC1L1	chr7	65868074	65964558
VKORC1_chr16_31085854_31099797	1/1	t0001	349	189	43	48	76	11	9	copy fasta	VKORC1	chr16	31085854	31099797
VKORC1_chr16_31085854_31099797	0/0	t0002	349	119	37	25	25	7	25	copy fasta	VKORC1	chr16	31085854	31099797
VKORC1_chr16_31085854_31099797	0/0	t0003	349	1	0	0	1	0	0	copy fasta	VKORC1	chr16	31085854	31099797
VKORC1_chr16_31085854_31099797	0/0	t0004	349	1	0	1	0	0	0	copy fasta	VKORC1	chr16	31085854	31099797
VLDLR_chr9_2616787_2665056	0/0	t0001	6586	50	7	2	37	1	3	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0002	6577	32	0	9	19	1	3	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0003	6586	26	1	4	20	1	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0004	6577	15	4	5	3	2	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0005	6589	10	0	7	2	1	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0006	6578	10	1	3	6	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0007	6586	9	0	1	8	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0008	6586	9	2	1	6	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0009	6587	8	0	2	6	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0010	6582	7	0	0	7	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0011	6586	6	1	0	4	0	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0012	6587	6	4	0	2	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0013	6587	5	5	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0014	6589	5	0	5	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0015	6589	4	0	2	0	0	2	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0016	6589	4	0	2	0	2	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0017	6592	4	4	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0018	6589	4	0	2	0	1	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0019	6579	4	0	1	3	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0020	6578	4	1	1	2	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0021	6577	4	0	0	4	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0022	6573	4	0	0	2	0	2	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0023	6582	3	0	0	1	0	2	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0024	6595	3	0	0	0	0	3	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0025	6597	3	0	1	0	1	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0026	6570	3	3	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0027	6589	3	0	2	0	1	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0028	6587	3	3	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0029	6596	3	2	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0030	6588	3	0	0	3	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0031	6586	3	3	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0032	6592	3	0	1	0	1	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0033	6594	3	0	0	0	0	3	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0034	6576	3	0	1	2	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0035	6587	2	0	0	2	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0036	6587	2	0	0	2	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	1/0	t0037	6592	2	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0038	6596	2	0	1	0	0	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0039	6592	2	0	0	2	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0040	6583	2	2	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0041	6588	2	1	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0042	6590	2	1	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0043	6586	2	0	0	0	0	2	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0044	6585	2	2	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056