JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VLDLR_chr9_2616787_2665056	0/0	t0045	6585	2	2	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0046	6585	2	1	0	0	1	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0047	6591	2	2	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0048	6593	2	2	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0049	6590	2	0	2	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0050	6589	2	2	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0051	6576	2	0	1	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0052	6583	2	0	0	0	0	2	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0053	6586	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0054	6606	1	0	0	0	0	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0055	6582	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0056	6592	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0057	6586	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0058	6586	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0059	6585	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0060	6594	1	0	0	0	0	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0061	6586	1	0	0	0	0	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0062	6588	1	0	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0063	6586	1	0	0	0	0	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0064	6591	1	0	0	0	0	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0065	6588	1	0	0	0	0	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0066	6596	1	0	0	0	0	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0067	6598	1	0	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0068	6594	1	0	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0069	6593	1	0	0	0	0	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0070	6589	1	0	0	0	1	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0071	6593	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0072	6578	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0073	6578	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0074	6577	1	0	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0075	6583	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0076	6583	1	0	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0077	6586	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0078	6592	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0079	6588	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0080	6588	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0081	6592	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0082	6578	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0083	6580	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0084	6587	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0085	6587	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0086	6588	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0087	6579	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0088	6597	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0089	6595	1	0	0	0	1	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0090	6593	1	0	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0091	6586	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0092	6587	1	0	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0093	6591	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0094	6590	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056