JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VLDLR_chr9_2616787_2665056	0/0	t0095	6588	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0096	6587	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0097	6587	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0098	6586	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0099	6586	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0100	6586	1	0	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0101	6586	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0102	6583	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0103	6588	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0104	6592	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0105	6592	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0106	6591	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0107	6588	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0108	6586	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0109	6595	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0110	6590	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0111	6599	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0112	6596	1	0	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0113	6590	1	0	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0114	6589	1	0	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0115	6589	1	0	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0116	6588	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0117	6588	1	0	0	0	0	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0118	6588	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0119	6595	1	0	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0120	6591	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0121	6580	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0122	6582	1	0	0	0	1	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0123	6584	1	0	0	0	0	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0124	6585	1	0	0	0	0	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0125	6577	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0126	6577	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0127	6577	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0128	6577	1	0	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0129	6577	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0130	6577	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0131	6577	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0132	6573	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0133	6583	1	0	0	0	0	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/1	t0134	6585	1	0	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0135	6585	1	0	0	0	0	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0136	6582	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0137	6582	1	1	0	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0138	6585	1	0	0	0	1	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0139	6587	1	0	0	0	0	1	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0140	6591	1	0	1	0	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0141	6584	1	0	0	0	1	0	copy fasta	VLDLR	chr9	2616787	2665056
VLDLR_chr9_2616787_2665056	0/0	t0142	6577	1	0	0	1	0	0	copy fasta	VLDLR	chr9	2616787	2665056
VMA21_chrX_151392206_151414364	1/1	t0001	4410	145	4	35	87	3	14	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0002	4415	53	18	15	7	5	8	copy fasta	VMA21	chrX	151392206	151414364