Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AAK1_chr2_69452997_69648739	0/0	t0104	18281	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0105	18270	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0106	18279	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0107	18276	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0108	18275	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0109	18272	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0110	18271	1	0	0	0	1	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0111	18271	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0112	18274	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0113	18270	1	0	0	0	0	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0114	18271	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0115	18275	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0116	18274	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0117	18274	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0118	18274	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0119	18274	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0120	18277	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0121	18276	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0122	18274	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0123	18276	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0124	18272	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0125	18274	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0126	18274	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0127	18277	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0128	18274	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0129	18273	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0130	18273	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0131	18274	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0132	18275	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0133	18277	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0134	18279	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0135	18277	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0136	18273	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0137	18279	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0138	18272	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0139	18278	1	0	0	0	0	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0140	18276	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0141	18278	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0142	18279	1	0	0	0	0	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0143	18276	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0144	18274	1	0	0	0	0	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0145	18273	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0146	18276	1	0	0	0	0	1	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0147	18272	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0148	18278	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0149	18272	1	0	0	1	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0150	18273	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0151	18272	1	0	1	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0152	18280	1	1	0	0	0	0	copy fasta	AAK1	chr2	69452997	69648739
AAK1_chr2_69452997_69648739	0/0	t0153	18277	1	0	0	0	0	1	copy fasta	AAK1	chr2	69452997	69648739