JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VMA21_chrX_151392206_151414364	0/0	t0003	4415	45	31	2	10	0	2	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0004	4415	7	5	2	0	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0005	4415	6	6	0	0	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0006	4415	3	0	0	0	3	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0007	4415	3	3	0	0	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0008	4415	3	0	0	3	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0009	4410	2	0	0	2	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0010	4415	2	2	0	0	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0011	4410	2	0	0	2	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0012	4415	1	1	0	0	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0013	4415	1	1	0	0	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0014	4414	1	1	0	0	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0015	4415	1	1	0	0	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0016	4415	1	1	0	0	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0017	4415	1	0	1	0	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0018	4410	1	0	0	0	0	1	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0019	4409	1	0	0	1	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0020	4409	1	0	0	1	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0021	4410	1	0	0	0	0	1	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0022	4411	1	0	0	1	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0023	4411	1	0	0	1	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0024	4411	1	0	1	0	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0025	4412	1	0	0	1	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0026	4411	1	0	0	1	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0027	4410	1	0	0	1	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMA21_chrX_151392206_151414364	0/0	t0028	4410	1	0	0	1	0	0	copy fasta	VMA21	chrX	151392206	151414364
VMAC_chr19_5899872_5915853	0/0	t0001	1733	171	29	29	82	3	28	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	1/0	t0002	1731	50	1	6	34	0	8	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0003	1725	49	20	7	18	2	2	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/1	t0004	1725	26	2	12	2	3	6	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0005	1736	19	8	3	7	0	1	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0006	1725	7	7	0	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0007	1725	6	5	1	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0008	1730	5	1	1	2	0	1	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0009	2046	5	5	0	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0010	1731	5	0	0	5	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0011	2048	4	0	2	0	1	1	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0012	1726	4	0	2	0	1	1	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0013	1739	3	1	0	2	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0014	1722	3	0	1	2	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0015	1733	2	0	0	2	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0016	1722	2	0	2	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0017	2049	2	0	2	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0018	2049	2	2	0	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0019	1720	2	2	0	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0020	1733	2	0	0	2	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0021	1722	1	1	0	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0022	1718	1	1	0	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0023	1742	1	0	0	1	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0024	1733	1	0	0	1	0	0	copy fasta	VMAC	chr19	5899872	5915853