JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VMAC_chr19_5899872_5915853	0/0	t0025	2052	1	1	0	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0026	1736	1	0	0	1	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0027	2048	1	1	0	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0028	1725	1	1	0	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0029	1723	1	1	0	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0030	1734	1	0	0	1	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0031	1737	1	0	1	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0032	1723	1	1	0	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0033	1731	1	0	0	1	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0034	1724	1	1	0	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0035	1725	1	1	0	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0036	1733	1	0	0	1	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMAC_chr19_5899872_5915853	0/0	t0037	1733	1	0	1	0	0	0	copy fasta	VMAC	chr19	5899872	5915853
VMO1_chr17_4780285_4791364	1/1	t0001	90	439	85	80	210	18	44	copy fasta	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/0	t0002	90	3	3	0	0	0	0	copy fasta	VMO1	chr17	4780285	4791364
VMO1_chr17_4780285_4791364	0/0	t0003	90	2	2	0	0	0	0	copy fasta	VMO1	chr17	4780285	4791364
VMP1_chr17_59702654_59847255	1/0	t0001	2466	133	45	27	42	5	13	copy fasta	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/1	t0002	2466	71	3	12	46	1	8	copy fasta	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	t0003	2466	52	20	9	21	0	2	copy fasta	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	t0004	2466	11	10	1	0	0	0	copy fasta	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	t0005	2466	5	0	0	1	0	4	copy fasta	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	t0006	2466	4	4	0	0	0	0	copy fasta	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	t0007	2466	2	0	0	0	0	2	copy fasta	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	t0008	2466	2	2	0	0	0	0	copy fasta	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	t0009	2466	1	0	0	0	0	1	copy fasta	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	t0010	2466	1	0	1	0	0	0	copy fasta	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	t0011	2466	1	0	0	1	0	0	copy fasta	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	t0012	2466	1	0	0	1	0	0	copy fasta	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	t0013	2466	1	1	0	0	0	0	copy fasta	VMP1	chr17	59702654	59847255
VMP1_chr17_59702654_59847255	0/0	t0014	2466	1	1	0	0	0	0	copy fasta	VMP1	chr17	59702654	59847255
VN1R1_chr19_57449790_57462140	1/1	t0001	1290	326	69	45	163	9	38	copy fasta	VN1R1	chr19	57449790	57462140
VN1R1_chr19_57449790_57462140	0/0	t0002	1290	78	12	26	28	4	8	copy fasta	VN1R1	chr19	57449790	57462140
VN1R1_chr19_57449790_57462140	0/0	t0003	1290	10	0	0	10	0	0	copy fasta	VN1R1	chr19	57449790	57462140
VN1R1_chr19_57449790_57462140	0/0	t0004	1290	9	8	1	0	0	0	copy fasta	VN1R1	chr19	57449790	57462140
VN1R1_chr19_57449790_57462140	0/0	t0005	1290	4	4	0	0	0	0	copy fasta	VN1R1	chr19	57449790	57462140
VN1R1_chr19_57449790_57462140	0/0	t0006	1290	1	0	0	1	0	0	copy fasta	VN1R1	chr19	57449790	57462140
VN1R1_chr19_57449790_57462140	0/0	t0007	1290	1	0	0	0	1	0	copy fasta	VN1R1	chr19	57449790	57462140
VN1R1_chr19_57449790_57462140	0/0	t0008	1290	1	1	0	0	0	0	copy fasta	VN1R1	chr19	57449790	57462140
VN1R2_chr19_53253292_53264602	1/0	t0001	124	216	32	37	118	6	22	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/1	t0002	124	147	24	26	79	4	13	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	t0003	124	84	27	23	17	4	13	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	t0004	124	9	9	0	0	0	0	copy fasta	VN1R2	chr19	53253292	53264602
VN1R2_chr19_53253292_53264602	0/0	t0005	124	2	2	0	0	0	0	copy fasta	VN1R2	chr19	53253292	53264602
VN1R4_chr19_53261676_53272723	1/1	t0001	143	455	92	80	219	14	48	copy fasta	VN1R4	chr19	53261676	53272723
VN1R4_chr19_53261676_53272723	0/0	t0002	143	1	0	0	1	0	0	copy fasta	VN1R4	chr19	53261676	53272723
VNN1_chr6_132675849_132719055	0/0	t0001	2312	129	34	13	69	0	13	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0002	2312	93	3	27	53	5	5	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	1/1	t0003	2312	89	11	28	31	3	14	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0004	2312	28	2	1	22	2	1	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0005	2312	14	1	8	0	2	3	copy fasta	VNN1	chr6	132675849	132719055